Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00897 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGGTAGGAATACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCAATAGATGGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCCACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTCATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCCGTTGCTGATGGGGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCCGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCTGATCATGTGAATATGACACCGTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCAAACTTGGCTCGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCTAGCATGGTAGATCTTTCTACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCCTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAATAATTGTCCGGCTCAGCCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGCATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTCAATGATCAATTTAACTTTGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACCGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1683 0.4296 MGHRHLYSSSPMFDGEPDQNWNHMHTDQQYVNLGRNTTSDNGSFIYPMENMSIDGISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSHDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVADGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCPAHGRVPSSDANAFNHEASHFLVGSGSSNAPVDVGGFHNEFGTSRNPTAPQSFHNNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00897 560 SUPERFAMILY RING/U-box 497 552 - -
Viun7g00897 560 MobiDBLite consensus disorder prediction 347 366 - -
Viun7g00897 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 553 IPR013083 -
Viun7g00897 560 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 145 553 IPR045191 GO:0061630
Viun7g00897 560 MobiDBLite consensus disorder prediction 138 159 - -
Viun7g00897 560 CDD RING-H2_RNF24-like 505 552 - -
Viun7g00897 560 ProSiteProfiles Zinc finger RING-type profile. 507 549 IPR001841 -
Viun7g00897 560 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 472 553 - -
Viun7g00897 560 SMART ring_2 507 548 IPR001841 -
Viun7g00897 560 Pfam Ring finger domain 506 549 IPR001841 -
Viun7g00897 560 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00897 Viun-Chr7 8355665 8361646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00897 1 559 C3H Transcription Factor Family AT2G37150 41.549 5.58e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00897 - - gmx:100786013 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00897 7 8355665 8361646 Viun7g00897 7 8355665 8361646 ECH
Viun1g02348 1 34017009 34025912 Viun7g00897 7 8355665 8361646 PCT