Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00896 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGGTAGGAATACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCAATAGATGGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCCACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTCATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCCGTTGCTGATGGGGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCCGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCTGATCATGTGAATATGACACCGTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCAAACTTGGCTCGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCTAGCATGGTAGATCTTTCTACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCCTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAATAATTGTCCGGCTCAGCCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGCATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACCGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1653 0.4313 MGHRHLYSSSPMFDGEPDQNWNHMHTDQQYVNLGRNTTSDNGSFIYPMENMSIDGISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSHDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVADGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCPAHGRVPSSDANAFNHEASHFLVGSGSSNAPVDVGGFHNEFGTSRNPTAPQSFHNNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00896 550 SUPERFAMILY RING/U-box 487 542 - -
Viun7g00896 550 MobiDBLite consensus disorder prediction 347 366 - -
Viun7g00896 550 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Viun7g00896 550 SMART ring_2 497 538 IPR001841 -
Viun7g00896 550 MobiDBLite consensus disorder prediction 138 159 - -
Viun7g00896 550 CDD RING-H2_RNF24-like 495 542 - -
Viun7g00896 550 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 145 543 IPR045191 GO:0061630
Viun7g00896 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 543 IPR013083 -
Viun7g00896 550 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 462 543 - -
Viun7g00896 550 MobiDBLite consensus disorder prediction 247 266 - -
Viun7g00896 550 Pfam Ring finger domain 496 539 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00896 Viun-Chr7 8355665 8361647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00896 1 549 C3H Transcription Factor Family AT2G37150 40.845 2.20e-104 322