Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00893 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGATGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGAACCTTGGTAGGAATACCACTTCCGACAATGGCTCTTTTATTTATCCTATGGAAAATATGTCAATAGATGGCATCTCTTTTCCATCTCATTGGAACACTGCTCCAAGGTCAAATGGGTATACCTCCACAAGTCTCAACATTGAAGCACCCTCTCATCAAACAGATATATCAGGCACTTCTCATGATCATTTTCTGCATCCATCAAGTGGTGGAATGTTTTATGCGGTGTCTGAAAATTATGTACACCAGCCTTCTAGTTCCAATTATGACAGACAATCATTTCCCGTTGCTGATGGGGGTTTTATTGATCTCACAATGGGAAATGGGCGAGGGCCTGGGCCTCACAAGCGGAAGAGCCCTGGAGTTCCTTCCGTCTGTGAGAGAGGAAGTACAAGCAGATGTTTTAATGCTGCAAGTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCTGAGAAGCCCACTATGGATTCACTATATATGCCTTGGGATCATGTTAATATGACACCTGATCATGTGAATATGACACCGTCATTTAGAGGTAGAGGCCTTTCAATACGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTACACTTGATTTGGAATCAAACTTGGCTCGGACCCATTTATCGAATACTCATTCACACAACTCATTCTCTACCGGTCCCCAAATGGACCATTCTAGCATGGTAGATCTTTCTACTCAAACTTCTGGATCTTTGACAAGGGATTGGAGCCAAATGAGTGTGTGTCCTGCTCATGGAAGGGTGCCATCATCAGATGCAAATGCTTTTAATCATGAGGCAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCACAAAGTTTTCATAATAATTGTCCGGCTCAGCCTGCTAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCCAGCTTGCGCTTGGGTCGCATGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACCATTGGCTGGCACAGCAATGATAGAAATGGAAGGTCAAGAATACATAGTGATAGATATCGAGCATTGGCTGATGAGGTTGGTCTCAATGATCAATTTAACTTTGAGGTATCTATGGCATCTTCTCTCAAGAGCTTTGTTCTTGGTTTCATGATTGTTGATCGCACTTCACTGTATGGTAGGAATATGATTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTCCTTGCACTCGGAGAGAGAATAGGCCATGTGAGCACCGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACGATATACTGTTCATCCGAGCCAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACGTGGACGATGTTGGAACGCTGAAAGCTTGTGGGCATGATTACCATGTGAGTTGCATTAGAAAGTGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGAAACGAAGGATAAATAA 1719 0.4287 MGHRHLYSSSPMFDGEPDQNWNHMHTDQQYVNLGRNTTSDNGSFIYPMENMSIDGISFPSHWNTAPRSNGYTSTSLNIEAPSHQTDISGTSHDHFLHPSSGGMFYAVSENYVHQPSSSNYDRQSFPVADGGFIDLTMGNGRGPGPHKRKSPGVPSVCERGSTSRCFNAASANAADRPTSSELRPEKPTMDSLYMPWDHVNMTPDHVNMTPSFRGRGLSIRGESSLRNVRSRSTLDLESNLARTHLSNTHSHNSFSTGPQMDHSSMVDLSTQTSGSLTRDWSQMSVCPAHGRVPSSDANAFNHEASHFLVGSGSSNAPVDVGGFHNEFGTSRNPTAPQSFHNNCPAQPARGVRSNYSQRSTPTFRASSSLRLGRMAPSDDGLHMVAESYSSRHPRPLTTIGWHSNDRNGRSRIHSDRYRALADEVGLNDQFNFEVSMASSLKSFVLGFMIVDRTSLYGRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEPSQEEEACAICLEEYKNVDDVGTLKACGHDYHVSCIRKWLSMKKVCPICKASALPEETKDK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00893 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 565 IPR013083 -
Viun7g00893 572 Pfam Ring finger domain 518 561 IPR001841 -
Viun7g00893 572 MobiDBLite consensus disorder prediction 347 366 - -
Viun7g00893 572 ProSiteProfiles Zinc finger RING-type profile. 519 561 IPR001841 -
Viun7g00893 572 SUPERFAMILY RING/U-box 509 564 - -
Viun7g00893 572 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 484 565 - -
Viun7g00893 572 MobiDBLite consensus disorder prediction 138 159 - -
Viun7g00893 572 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 145 565 IPR045191 GO:0061630
Viun7g00893 572 CDD RING-H2_RNF24-like 517 564 - -
Viun7g00893 572 SMART ring_2 519 560 IPR001841 -
Viun7g00893 572 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00893 Viun-Chr7 8355665 8361652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00893 1 571 C3H Transcription Factor Family AT2G37150 40.690 2.43e-107 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00893 - - gmx:547939 956.822