Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00880 ATGGACTTGCACTGGAAGCAATGGAGAAATCAGCAGGAGTCAGAGCAACAACAACATTCCCCAAACACGCCAAAATTTCTCCCTCAACACCATCCACCACCTGCCTCTGCACCACTCTCTCTCTTTCTACCTCAACCCACCACTCTGCCATCGTTTTCTGATTCCACCCTTACTTCTTCTGCACCTCCCAGATTTCCCAGGATCGAGAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGGTACATGCTGGCCGGTGCTCCTGTTCCTCCTCAGCTGCTTCAACCAATCAAGAAAAGCTTCCTTCATTCCCCTCTCCCTTTCCTTCATCTTTATCACCCTCCTTTGTTGGAATCAGGGTACTATTGGGGAAGAGAAGCAGTGGATCCGGAGCCAGGGCGGTGCCGGAGGACGGACGGGAAGAAGTGGCGGTGCTCGAGGGAGGCGGTGGAGGGTCAGAAGTACTGCGAGCGGCACATGCATCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAACAACCTCATGCATCTTCTTCTCCATCCTCTGCTTCCTTCAAACATCATCATCTCCATCACCACAATCAAATTTCCTCTGGGGCCAAGGCTGACAGCAAGAGCTTGTCTGAAAACCGTGATCATGTGGATGGGGATGGCAGATCTGATAGCCATGTCCTGAGGCATTTCTTCGATGATTGGCCAAAGACAGTGCAAGAAGAAGAACATGGTGAAAGCAATGGTAGCAAGAACAACAACACTGGAACATATCTTTCGATGTCAACACAAGGAATCACTTCCTCGGATGTGTCATTGAAACTGTCCACTGGTCATGCAGAGAATACATGCCACGTGGGTTCAGTTGGAGGACCACTTGCAGAGGCACTGCGATCATCCACCGCCACTTCTTCACCAACCAGTGTTCTGCTGCAGTTGCCAACTACTTCTGCTTGCGACACCAGCGTCATCAGCACCTAA 993 0.5086 MDLHWKQWRNQQESEQQQHSPNTPKFLPQHHPPPASAPLSLFLPQPTTLPSFSDSTLTSSAPPRFPRIESCFSFAQWQELELQALIFRYMLAGAPVPPQLLQPIKKSFLHSPLPFLHLYHPPLLESGYYWGREAVDPEPGRCRRTDGKKWRCSREAVEGQKYCERHMHRGRNRSRKPVEQPHASSSPSSASFKHHHLHHHNQISSGAKADSKSLSENRDHVDGDGRSDSHVLRHFFDDWPKTVQEEEHGESNGSKNNNTGTYLSMSTQGITSSDVSLKLSTGHAENTCHVGSVGGPLAEALRSSTATSSPTSVLLQLPTTSACDTSVIST 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00880 330 PANTHER GROWTH-REGULATING FACTOR 5 30 274 IPR031137 GO:0005634|GO:0006351|GO:0032502
Viun7g00880 330 SMART QLQ_2 70 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun7g00880 330 MobiDBLite consensus disorder prediction 163 229 - -
Viun7g00880 330 ProSiteProfiles WRC domain profile. 136 180 IPR014977 -
Viun7g00880 330 ProSiteProfiles QLQ domain profile. 71 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun7g00880 330 Pfam QLQ 72 104 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun7g00880 330 Pfam WRC 137 179 IPR014977 -
Viun7g00880 330 MobiDBLite consensus disorder prediction 26 40 - -
Viun7g00880 330 MobiDBLite consensus disorder prediction 212 229 - -
Viun7g00880 330 MobiDBLite consensus disorder prediction 10 25 - -
Viun7g00880 330 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00880 Viun-Chr7 8257724 8260100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00880 1 321 GRF Transcription Factor Family AT3G52910 44.186 2.36e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Viun7g00880 WRC 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00880 - - vum:124840321 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00880 7 8257724 8260100 Viun7g00880 7 8257724 8260100 ECH
Viun1g02494 1 35315529 35318788 Viun7g00880 7 8257724 8260100 PCT