Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00878 ATGCAGAAACGAAAAGCAGGGAGGAAGAAGTTCCATGAGACACGTCACCCTGTGTACAAAGGTGTGAGACAGAGGAACGGGAAATGGGTGTCTGAGTTACGACAACCTAATAACAAAAACGCACGTGTGTGGCTTGGAACCTTCGCACGCCCCGACATGGCCGCTGTTGCTTACGACGTTGCTGCTTTGGCTTTCAAGGGTGATCGCGCTTCCTTGAACTTCCCCGACGCGATTTCTTCATTGCCGCGTCTCAACTCGGCTACCTCCTCTGTCCAGGCGATTCAGTTTGCCGCCACACAAGCAGCGGAGAAGCACTTTTCTTGCGCCGAGCTTCAAAAGCTGGGGGACGATGTTTCTTCGGAGGGAGGTTCTGGAAGCTTCTCTTGGGATGAGGATTCTTCGGAGCTGTCGTCGGAAGAAGGTTCTAGAAAGTTCTTTTGGGATGAGGAGGAAGTGTTTAACATGCCGGAGTTGTTGAATAGCATGGCCGAAGCGTTGATCATTACACCCCCTGCTTTACAAAAAGGATTCAATTGGGTTGGTGGGGAAACCACTGTAGATTTGACTCTGTGGTGA 576 0.5104 MQKRKAGRKKFHETRHPVYKGVRQRNGKWVSELRQPNNKNARVWLGTFARPDMAAVAYDVAALAFKGDRASLNFPDAISSLPRLNSATSSVQAIQFAATQAAEKHFSCAELQKLGDDVSSEGGSGSFSWDEDSSELSSEEGSRKFFWDEEEVFNMPELLNSMAEALIITPPALQKGFNWVGGETTVDLTLW 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00878 191 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Viun7g00878 191 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 191 IPR045277 GO:0003700
Viun7g00878 191 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Viun7g00878 191 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Viun7g00878 191 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Viun7g00878 191 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Viun7g00878 191 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Viun7g00878 191 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Viun7g00878 191 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00878 Viun-Chr7 8200245 8201082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00878 3 191 AP2-EREBP Transcription Factor Family AT4G25490 44.211 2.19e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun7g00878 AP2 4.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00878 - - var:108324544 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00878 7 8200245 8201082 Viun7g00878 7 8200245 8201082 ECH
Viun7g00878 7 8200245 8201082 Viun1g02490 1 35252260 35253412 PCT