Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00877 ATGTATTCTGATAATGCAACCGGCAGCAGCAGAGCCTCTTCCGGAACCGGCCGCTACCGCGGAGTGCGCCGGAGGAGCAACGGAAAATGGGTGTCTGAGATCCGTGAACCGAGAAAGCCTAGCAGGATTTGGTTAGGCACATTCCCTACACCTGAAATGGCCGCAGTGGCTTATGACGTGGCTGCTTATGCTCTCAAGGGTAAGGACGCTGAGCTGAATTTCCCTGACTCCGCTTCTTCCCTTCCTGTCCCCGATTCACTCTCGGCGCGTGACATTCAGGTGGCGGCAGCCGCTGCGGCGGCGGCTGCCGGAGCTGCGAAGGATGCTATGCAGATGCCAACAGGGAATAATAACTCTTCAGGGGTACAAGGGAATCAAACAGGGACGAGTAACGAGTTCGTGGACGAGGATTTGATCTTTGACATGCCCAATGTTCTGGTGAATATGGCACAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTGTTGAACCCAATAGCCCAGAAAACATCGAACATGAGACAAGCCTGTGGAATTTCCCTTAA 549 0.5355 MYSDNATGSSRASSGTGRYRGVRRRSNGKWVSEIREPRKPSRIWLGTFPTPEMAAVAYDVAAYALKGKDAELNFPDSASSLPVPDSLSARDIQVAAAAAAAAAGAAKDAMQMPTGNNNSSGVQGNQTGTSNEFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGVEPNSPENIEHETSLWNFP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00877 182 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Viun7g00877 182 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Viun7g00877 182 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Viun7g00877 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 18 180 IPR045277 GO:0003700
Viun7g00877 182 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Viun7g00877 182 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Viun7g00877 182 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Viun7g00877 182 MobiDBLite consensus disorder prediction 1 16 - -
Viun7g00877 182 MobiDBLite consensus disorder prediction 1 29 - -
Viun7g00877 182 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Viun7g00877 182 FunFam Ethylene-responsive transcription factor 2 18 76 - -
Viun7g00877 182 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00877 Viun-Chr7 8159009 8160308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00877 8 182 AP2-EREBP Transcription Factor Family AT2G36450 59.459 4.97e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g00877 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00877 - - pvu:PHAVU_007G222600g 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00877 7 8159009 8160308 Viun7g00877 7 8159009 8160308 ECH
Viun1g02490 1 35252260 35253412 Viun7g00877 7 8159009 8160308 PCT