Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00870 ATGGAGAACTCGCGTAGACCGTTCGATAGATCGCGAGAGCCAGGGCCGAAGAAGCCCCGATTGATGGAAGAGCTGGATCGGGTTCCGAATTCTGGTGCGAGACAGTTTCCTCAGCTACAAATGATTTTTGGGGTTACGACGTTACCGTCTGCAAGGTTTAGAACAAACGAAAGAGACGTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCATTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTTTTAGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCAGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAATTGGGCTTCACTTCTGCAGTCAATAGCTCATCTGCTTCTGCTTCACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATTCATGTTAATCCCAAGTATTTAGAAAGACAACGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGATGACCAAGAGATGCCTGGTAGAACTTTAGGTGTTTTACGACCATGGGTGGATCCTAATGTTACAGTTAGCGTCAATTCATGTGAAAATGATCCTCGTGCTCGAAGAGATGCATTCAATGATTCTGCTCCAGAAAAGAGCACTGGTGCATCCTATGGAAGCAATGACTTTGGTTCCAATGTTTCAAGGAATTTAGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACTGAGTCTGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCGGGGACCATGCCTGGACAAAGAAATGGTTTGAGTCTCAAGTATAGTTTTTCAAGTACCGATGCACCAAAGTCCATGGTTTTGGATGCACATCATCAACCGGCACATAACATAACTAGCATACAGAGCAATGTGATCTCAAATAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCACGGTACATCTGTTGTTAGCAGCTTGAGCAAAGATGCTTGGACCGCTGATGATGAGAATTTGGAAGTTGAAGATCGCATCCAAGTCAGAAATGCTTTTGTGGTAAATGCTGATAGAGAAATAGGCATTGAATCTCAAGCCAATGAAAAGAAACAATTTCCTGCATCTCAGCATCATTCATCACTATCATGGCAATTGCAAGAGCAGCATTCTACTGATGAGTTGAATCGGAAGGCTGGTCACTCCAGCAGATTTGTGTCCACACTTGGTGCCATACCGTCCAATACAAATGCCTCTATTGCCAGGATGGAGAATCGGCCATACCTGTCAAGTGCAACCATAGGATTGCCAGGAATTGCAGGACCCTTTCATTCTTTGGGAGCTGAAAATCCTTCAGGGCAGTCACCTTTGCAGCGGAGGTCTCCATCACCGCCAGGTCCATTCTCTTCAACGACTTTTCAGGCAAGGCATCAGCAACAATTGGGCACTTCTCACAATGAGGTTACTGTTAAGACTGAGAAGCCACCTGTGTCCAAGGTTCCTTTAGCCAGAGAAACTAAAAGTAGCATGAGTACAGGGAATCTTCCAACTCGATTAGGTGTTCGGCCTTCACGAGCAGGTGGCCCTTCCCCTGCCACAGTAATTTCTTCAGTGTCCGCAATTGCATTACCATCTTCATTAGGTCCTTCTGGTGATAATTCATCTGCTCTTTCAAAAATGCCTAAAAGAAAGGCTGGACAACCACCTAGGTTATCTACTTTACCATCTGCTTCCTCTAATGTCAGCAGTGCCTCTGCCCAGACAACTGATACCAATAGTAGCTTAAATCCAATTGCCAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAATCAACAACTAAGGTGCCCTCTGAGTTGCTGACTCGATTGGAAGAAGAAAGCGATAGCATTACCACCGGTAACTCTCTGCCTGTGGCCTCAGTTTCTGGTTCTGCAGCTGTTCCAGTTCCTTCAATCAAAGATGAGGTTGATGACACTGCAAGAACACCCATATCTTTGTGTGAATCAACCAGTCCAGGAGTTGTAAATCTCATTGGCTTTGAGTTTAAGCATGATGTATTACGAGAATTCCATTCGTCTGTAATTAGTGGATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTCAGATTCCAAAAACAGTTCAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGAGGATGGTTTAACTAAGGCAACGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATATGTATCAGAGAATGAGGCTGATTCTGTAAATACATATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTATGGCTGTAGCAGATGAAAACCAATGCTTGTGCGTGTTGTGCGGTGAGCTATTTGAAGATTTTTACTATGAGGAAAGTGGGGAATGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTAATAGCAGCAGTGAGATGGGAACTGGAGATATGAGTACTGGAAGGGGTCCCATCATTCATGCAAATTGCTTATCAGATAACTTGATTTCAAGTGTCCCTGAGATGGGACAGGATTAA 2913 0.4428 MENSRRPFDRSREPGPKKPRLMEELDRVPNSGARQFPQLQMIFGVTTLPSARFRTNERDVESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNSSSASASLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVDDMTGAISNSNDDQEMPGRTLGVLRPWVDPNVTVSVNSCENDPRARRDAFNDSAPEKSTGASYGSNDFGSNVSRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMPGQRNGLSLKYSFSSTDAPKSMVLDAHHQPAHNITSIQSNVISNSWKNSEEEEYTWDEMNSGLTGHGTSVVSSLSKDAWTADDENLEVEDRIQVRNAFVVNADREIGIESQANEKKQFPASQHHSSLSWQLQEQHSTDELNRKAGHSSRFVSTLGAIPSNTNASIARMENRPYLSSATIGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPGPFSSTTFQARHQQQLGTSHNEVTVKTEKPPVSKVPLARETKSSMSTGNLPTRLGVRPSRAGGPSPATVISSVSAIALPSSLGPSGDNSSALSKMPKRKAGQPPRLSTLPSASSNVSSASAQTTDTNSSLNPIANLLSSLVAKGLISAETESTTKVPSELLTRLEEESDSITTGNSLPVASVSGSAAVPVPSIKDEVDDTARTPISLCESTSPGVVNLIGFEFKHDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHATRDREEDGLTKATRWYLKSSDWIVGKAEYVSENEADSVNTYGNEADRSQEDAMAVADENQCLCVLCGELFEDFYYEESGEWMFKGAVYFANSNSSSEMGTGDMSTGRGPIIHANCLSDNLISSVPEMGQD 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00870 970 MobiDBLite consensus disorder prediction 550 639 - -
Viun7g00870 970 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 41 958 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Viun7g00870 970 ProSitePatterns Zinc finger C2H2 type domain signature. 819 839 IPR013087 -
Viun7g00870 970 Pfam CID domain 91 200 IPR006569 -
Viun7g00870 970 MobiDBLite consensus disorder prediction 476 497 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 290 324 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 242 271 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 611 625 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 652 701 - -
Viun7g00870 970 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Viun7g00870 970 MobiDBLite consensus disorder prediction 219 276 - -
Viun7g00870 970 SMART 558neu5 85 207 IPR006569 -
Viun7g00870 970 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 474 508 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 571 598 - -
Viun7g00870 970 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Viun7g00870 970 MobiDBLite consensus disorder prediction 678 701 - -
Viun7g00870 970 CDD CID_Pcf11 87 199 IPR047415 -
Viun7g00870 970 MobiDBLite consensus disorder prediction 53 78 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 310 324 - -
Viun7g00870 970 Gene3D - 82 207 IPR008942 -
Viun7g00870 970 MobiDBLite consensus disorder prediction 1 23 - -
Viun7g00870 970 MobiDBLite consensus disorder prediction 219 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00870 Viun-Chr7 7952757 7961515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00870 791 955 C2H2 Transcription Factor Family AT4G04885 37.500 6.22e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00870 K14400 - gmx:100807857 1501.88