LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g00867	ATGAACCCCACCGATGACAACTCTCCCAAGCCCTTGGAGGTTCTGCAGATGAACCCGGTTCCGCCCTTTTTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCCATCATCTCCTGGGGCCCCTCCGGCTTTAGCTTCGTCGTCTGGGACCCTCTCGAGTTCGCCAGAGTCGTCTTGCCGCGACATTTCAAGCACAACAACTTCTCCAGTTTCGTTCGCCAGCTTAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGAGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCACCACAACAATCCCAGCAGGTTGGTAACTATATTGGAATCGGAGCTTGTACCACTGAGGCAGGGAGGTCTGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATGTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACCGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCACGCCTTAGGCAAAAGAAGGAACAGAGAGAAATAGATTCTCCAAGAGTGGTAAGAAAGTTTGTGAAGCAGCACCAACATGAAACTGGAACACCAGAAACCCTCCAAGAAGGACAGATAGTGAGGTACCACCAACCTGATTGGACAAATATAAGCATGTCTTCTGAAACTCCAAAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCAGGAGAAATGAGTGGAGCTGCACAACATCTCACTGCTCAAATTCAGAATATTGTAACAGATGATTTGGCTGCAGAAATGATGATTGGAGAAGGATCATCTGAAGATCCCCTTTTCAAAGGGAAGAGTGTTATGAGTCCTATGAGTCCAAGTTTAGAACTTCCTGCAGATTATTTTACTTCCTTCCCAGAGGTTCTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAGCTGAAGACATCATCAAGCTTGAAGATATATGGGATTCTGGCCTCAATCTCAGTGGTGCTGGTTCAAGCTGTGGGAATGAACTGTGGGGCAATCCTATGAATTATGAACATGTTCCAGAGTTTGGAGTAACAAGTGGCATGTCTGAATCAGACATCTGGGATATTGGTGGCTCTGGAAGTTTGGGAATTGATAAGTGGCCAGGTGATGAACATGAACCTTCTTCTATTGGTGAAGTAGATGAGCCAAAAGAAGATAGGCCTCAGTGTCTTGATCCATAG	1350	0.4585	MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWGPSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSPQQSQQVGNYIGIGACTTEAGRSEVEVEIEKLRKERTMLMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKQMVSFLAKLIQNPAFLARLRQKKEQREIDSPRVVRKFVKQHQHETGTPETLQEGQIVRYHQPDWTNISMSSETPKLSPVSIEQSPHYLSQGLAGEMSGAAQHLTAQIQNIVTDDLAAEMMIGEGSSEDPLFKGKSVMSPMSPSLELPADYFTSFPEVLTQEKGFQDFSALGAEDIIKLEDIWDSGLNLSGAGSSCGNELWGNPMNYEHVPEFGVTSGMSESDIWDIGGSGSLGIDKWPGDEHEPSSIGEVDEPKEDRPQCLDP	449

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g00867	449	Gene3D	-	15	113	IPR036388	-
	Viun7g00867	449	SMART	hsfneu3	19	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00867	449	Pfam	HSF-type DNA-binding	23	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00867	449	SUPERFAMILY	"Winged helix" DNA-binding domain	19	112	IPR036390	-
	Viun7g00867	449	MobiDBLite	consensus disorder prediction	422	449	-	-
	Viun7g00867	449	Coils	Coil	136	163	-	-
	Viun7g00867	449	MobiDBLite	consensus disorder prediction	415	449	-	-
	Viun7g00867	449	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	9	250	IPR027725	-
	Viun7g00867	449	ProSitePatterns	HSF-type DNA-binding domain signature.	62	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00867	449	PRINTS	Heat shock factor (HSF) domain signature	74	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00867	449	PRINTS	Heat shock factor (HSF) domain signature	23	46	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00867	449	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun7g00867	449	FunFam	Heat stress transcription factor B-4	15	113	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g00867	Viun-Chr7	7912298	7915531	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g00867	9	412	HSF	AT5G03720	45.833	2.90e-106	319

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Viun7g00867		HSF_DNA-bind	7.6e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g00867	K09419		-	gmx:100780835	693.345