Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00862 ATGGAAGCAGCACTCAGCAACAGCACCATTTCTGCAGGGTCAGCTCCACCACCGTCTGGGGTGTCTCAGCCAATGAACATGAATGTTAACATGAACATGAACGTGGGAAACAGCGAAGGAACAACAGCAGCAGCACCTGCGCCAGCGCCAGCACCAGCGTCAACACCAACAACGATGGTTCCTGCAGTGCCAGCTGCAACGACGACAACAACATTGGTAGCAACAACACCGGGGAGCACTGGGGGGCAAGGGAGTTTTGACTTGTTTGGGAAGAAGAAGAGAGGGAGGCCGAGAAAGTATGATGCAGATGGGAACCTGAGGGTGAGTGCAACCCCGACACCAGCTCCACCGGGTTTCACTTTGTCCACACCTTCTGAGTTCTCTAACAAAAGGGGCCGTGGCAAACACACAGCTTTTGGCAACTACCAACTCTTTTCTTCTTTTGGTGAGGTGTTTGCAAACACAGCTGCTGGTGATTTCATACCGCATGTGGTGACTGTTTACACTGGAGAGGATGTTGCTGGAAAGATCTTGTCATTTGCTCAGAAGGGTCCAAGAGGAATTTGTATTCTCTCTGCCAATGGAGCTATCTCAAATGTCACCATACGCCAACCTGGTTCTTCTGGTGGCATATTGACTTACGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATTCACTGTTGCTGACAACAGTGGCATGAAAAGTCGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGAGTGATCGGAGGTGGTGTTGCTGGACTTTTAACAGCTGCTGGTCCCATCCAAATTGTAGTAGGAAGCTTCACGCAAAATGCGCACAAGAGCCAAAAGAAGAAATACCAACGTGAACAACAGACAGTGGTGTCCCCTACTTCAGCTGTTCCAGAAACTGTGACATTTGCTAGACCTATCTCACAAGCAAATGCTGAAGGTGAAAACTTTTTGATGCCCATGTCTCAGATACCAGATCAAACCCAGAGAGAATCTGTGAGTGTTTCAAGTGACAAACAGAACCTAGATGCTACACTTGATGCTGCTACTTGGAATGGTTCTGAGGAATATTCAGACCAGAGGACATCCCCAGACATCAACATATCTTTGCCTGATGAATAG 1134 0.4824 MEAALSNSTISAGSAPPPSGVSQPMNMNVNMNMNVGNSEGTTAAAPAPAPAPASTPTTMVPAVPAATTTTTLVATTPGSTGGQGSFDLFGKKKRGRPRKYDADGNLRVSATPTPAPPGFTLSTPSEFSNKRGRGKHTAFGNYQLFSSFGEVFANTAAGDFIPHVVTVYTGEDVAGKILSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVADNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFTQNAHKSQKKKYQREQQTVVSPTSAVPETVTFARPISQANAEGENFLMPMSQIPDQTQRESVSVSSDKQNLDATLDAATWNGSEEYSDQRTSPDINISLPDE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00862 377 CDD DUF296 162 275 IPR005175 -
Viun7g00862 377 ProSiteProfiles PPC domain profile profile. 157 301 IPR005175 -
Viun7g00862 377 MobiDBLite consensus disorder prediction 329 371 - -
Viun7g00862 377 MobiDBLite consensus disorder prediction 329 377 - -
Viun7g00862 377 MobiDBLite consensus disorder prediction 89 103 - -
Viun7g00862 377 MobiDBLite consensus disorder prediction 1 41 - -
Viun7g00862 377 Gene3D - 162 295 - -
Viun7g00862 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 276 IPR005175 -
Viun7g00862 377 MobiDBLite consensus disorder prediction 73 132 - -
Viun7g00862 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 282 - -
Viun7g00862 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 344 IPR039605 GO:0003680
Viun7g00862 377 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00862 Viun-Chr7 7749457 7753669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00862 91 345 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.327 4.36e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00862 - - gmx:100779227 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00862 7 7749457 7753669 Viun7g00862 7 7749457 7753669 ECH