Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00850 ATGGAGTGGAACGGGAGCACAAGACGTTATGTTCCTCGACCAGACTCTTCCTTCGGCTTCCTTTACAACTACAACTACACACCATACCCAGGAATTGAAGTGAAGCAACAAAGTGTAGCGGAGTCAAGTTCGTCCATGGAAAAAATGAACCAGGACAAGAAGAAGAGATTAACGAGCGACCAGTTGGACTCGTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTTGACCCTGATAGAAAGATGAAGCTTTCCAAGGAGTTAGGGCTTCAACCTCGTCAAATTGCTGTCTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCGCTTAAACAGGAATTTGATGTCATATCCAAGGAAAAACAGAAGCTAGAGGAAGAGGTAATGAAGTTGAAGGGTATGCTGAGAGAACAAGCTTCTAGAACACAAGTATCAACAGGTTACACAGAAATCTCTGGAGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCGAAACGAAGAACAGTGCAGCAGCAGCAGCAGCATCAGCAGCATCAGAATATCGGAGAAGGAAACTGTTCTTTCACTTTGGAAGATTACAACACAGTTCCAGTACTACCCTACTGGCCTGGGGTCCCTTACTATCCCTAG 660 0.45 MEWNGSTRRYVPRPDSSFGFLYNYNYTPYPGIEVKQQSVAESSSSMEKMNQDKKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLREQASRTQVSTGYTEISGEETVESTSEALRCSKRRTVQQQQQHQQHQNIGEGNCSFTLEDYNTVPVLPYWPGVPYYP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00850 219 MobiDBLite consensus disorder prediction 37 63 - -
Viun7g00850 219 SMART HOX_1 51 112 IPR001356 GO:0003677
Viun7g00850 219 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Viun7g00850 219 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Viun7g00850 219 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Viun7g00850 219 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Viun7g00850 219 Gene3D - 42 116 - -
Viun7g00850 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 45 184 IPR045224 GO:0003700
Viun7g00850 219 MobiDBLite consensus disorder prediction 47 63 - -
Viun7g00850 219 Pfam Homeobox associated leucine zipper 108 142 IPR003106 GO:0006355|GO:0043565
Viun7g00850 219 Coils Coil 100 148 - -
Viun7g00850 219 FunFam Putative homeobox-leucine zipper protein ATHB-51 50 113 - -
Viun7g00850 219 CDD homeodomain 53 109 IPR001356 GO:0003677
Viun7g00850 219 SUPERFAMILY Homeodomain-like 37 110 IPR009057 -
Viun7g00850 219 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00850 Viun-Chr7 7617574 7619509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00850 1 138 Homeobox Transcription Factor Family AT5G03790 51.852 2.01e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun7g00850 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00850 - - gmx:100778007 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00850 7 7617574 7619509 Viun7g00850 7 7617574 7619509 ECH
Viun7g00850 7 7617574 7619509 Viun1g02459 1 34955057 34956624 PCT