Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00847 ATGGGGGACAAACACCATCTCGATGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGTGGCTACCACGCTATCCGAATCGGCGATACCTTCAACGCCGGTCGCTACGTCGTTCAGTCTAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACGTCAAACATTCTAGGTATGTGGCTTTGAAGGTTCAGAAGAGTGCTCAGCACTACACCGAGGCGGCCATGGATGAGATAACGATTTTGCAACAGGTTGCGGAGGGAGACCCTGACGATAAGAAATGCGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCCAATGGGCAGCATGTCTGCATGGTGTTTGAGTACCTTGGGGACAATCTTTTGACACTTATTAAGTACTCGGATTACCGTGGGTTGCCTATCGCCATGGTTAAGGAAATTTGCTTTCATATTCTTGTTGGATTGGATTACTTGCACAAACAGCTTTCCATCATACATACTGACTTGAAGCCTGAAAACATCCTGCTTTTGTCGATGATTGATCCATCTAAGGATCCTAGGAAGTCTGGGGCGCAGCTTATTCTTCCTAATAGTAAGGATAAGATGGTGCTAGAGTCGTCAGGTGTGAAAGATACGAAGATGTTGAATGGGGATTTGGTTAAGAATCACAAGAAGAAGATTAAGAGAAAAGCTAAACAAGCAGCCCATGGTTGTTTTGAGAAGGAAGTTTCTGAAGGAGTTGAGGGCAATCCTGAAACTTCTGGGGCTGTGGAGTCATCTCCTAATGCGAGTTCTACAAGGGAACATGCTTCCAGTTCTGCAGGAACTAGTAGGTTATCGGATGCTGATGGAACCAAGTTGAAAGAGCAGGGTAACAAAAGAGGAAGCCGATCAATGAGACAGAAGCTGCTGGCATCAGTTGATCTCAAGTGCAAGTTAGTGGACTTTGGTAATGCCTGCTGGACATATAAACAATTTACTAATGATATCCAGACAAGACAGTATCGGTGCCCAGAGGTTATTCTTGGGTCAAAATATTCTACTTCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGATGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAACGATGCCACGTAAGATAGCTCTAGGGGGGCGTTATTCCCGTGATTTCTTTAATAGATATGGTGATTTAAGGCACATCCGGCGATTGCGATTCTGGCCCTTGAATAAAGTCCTCATGGAGAAGTATGATTTCAGTGAGAAAGATGCAAATGATTTGACGGACTTTTTGGTTCCTATTCTTAATTTTGTTCCTGAAAAGCGGCCTACAGCTGGTGAGTGTCTTCTGCATCCTTGGATGAATGGAGGTCCACGTCTTTTGGAGCCATCCGTGCCTTCTAATCACAACCCAGCTGCCGAAACTGCTGTTTTGGATCAGAAGAAAAGGGAAAAAGATGAGAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGTTATCAATTCAGATTCTAAATCACTGATGCAATCACCATCAAAGAAAGCTTTCCAATCCACCCAGTAG 1629 0.4543 MGDKHHLDDSSDFTSEDEGTEDYRRGGYHAIRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDVKHSRYVALKVQKSAQHYTEAAMDEITILQQVAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIAMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAQLILPNSKDKMVLESSGVKDTKMLNGDLVKNHKKKIKRKAKQAAHGCFEKEVSEGVEGNPETSGAVESSPNASSTREHASSSAGTSRLSDADGTKLKEQGNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGTMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDLTDFLVPILNFVPEKRPTAGECLLHPWMNGGPRLLEPSVPSNHNPAAETAVLDQKKREKDEREAMEAGMGNIVINSDSKSLMQSPSKKAFQSTQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00847 542 SMART serkin_6 42 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00847 542 MobiDBLite consensus disorder prediction 247 304 - -
Viun7g00847 542 MobiDBLite consensus disorder prediction 498 514 - -
Viun7g00847 542 ProSiteProfiles Protein kinase domain profile. 42 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00847 542 MobiDBLite consensus disorder prediction 1 21 - -
Viun7g00847 542 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 12 502 - -
Viun7g00847 542 Gene3D Phosphorylase Kinase; domain 1 28 127 - -
Viun7g00847 542 MobiDBLite consensus disorder prediction 287 301 - -
Viun7g00847 542 MobiDBLite consensus disorder prediction 521 542 - -
Viun7g00847 542 MobiDBLite consensus disorder prediction 486 542 - -
Viun7g00847 542 FunFam Serine/threonine-protein kinase SRPK-like protein 306 476 - -
Viun7g00847 542 Pfam Protein kinase domain 309 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00847 542 Pfam Protein kinase domain 42 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00847 542 MobiDBLite consensus disorder prediction 258 285 - -
Viun7g00847 542 FunFam CMGC/SRPK protein kinase 28 127 - -
Viun7g00847 542 CDD STKc_SRPK 31 476 - -
Viun7g00847 542 SUPERFAMILY Protein kinase-like (PK-like) 36 490 IPR011009 -
Viun7g00847 542 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Viun7g00847 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Viun7g00847 542 Gene3D Transferase(Phosphotransferase) domain 1 96 185 - -
Viun7g00847 542 Gene3D Transferase(Phosphotransferase) domain 1 310 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00847 Viun-Chr7 7557082 7567682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00847 7 527 EF-hand Containing Proteins AT5G22840 69.714 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Viun7g00847 Pkinase 5.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00847 K08832 - gmx:100803070 1020.76