Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00836 ATGGCCGTTCCAGCTACGGTTGCCGCTGCTCAGTCTTCGCTTTACGTTGGAGATCTTCATCCTGACATCACCGACACCCAACTATTCCAGGCCTTCCGTGAATTCGAAAGCCTCTCTTCCGTCCGCGTCTGCAGGGATTCCATGACGAGGGCGTCGCTCCGTTACGGTTACGTCAACTTTATGTCTCAGCAAGACGCAAACCGAGCTATTAAAGTGAAAAATAATTCTTATCTCTTTGGAAAAGTGATAAGGGTCATGTGGTCACATCGCGATCCTAATGGAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCAATAGATAATGCGGTGCTACATGATTTATTTCAAAAATATGGAAATGTTTTGTCCAGCAAAGTAGTCGTGTATGACGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAATCGGAGGAATCTGCAAATAGTGCCATTGAGAAGTTGAATGGCTCTACCGTGAGAGACAAACAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCCGGTTATGATTCCAAGTATACAAATTTGTACATTAAAAACTTGGATTCGGATATTACGGAAGCACTTCTTCGGGAAAAGTTCTCCACTTTTGGAAAAATTATTAGTTTGGCTATCGCAAAGGACGACAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAGTCCAGATGATGCTAGAAAGGCGATGGAAACAATGAATGGATCGCAATTTGGTTCAAAGAATCTTTATGTGTCTAGGGCGCAGAAGAAGGCTGAACGTGAGCAACTCTTGCATAATCAATTTGAGGAAAAACGCAAGGAGCAAATACAGAAATCAAAGGGCTCCAACCTTTATGTGAAGAACATTGATGACGCTGTTGGTGAAAAAGAACTACGAGATCTGTTTAGTTCATGTGGCACAATCACTTCTGTAAAAGTTATGCGAAATGAAAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCTGAGGAGGCTATTAAAGCTATGAGCACTTTTTATGGATGCATGTTCTATGGTAAGCCACTGTATATTGCTTTCGCGCAGAGGAAGGAGGATAGGAAAACACAGCTGAAGCTCCACTATGCACCCCAACAAGCACGATTGAATGGATCTCCTGCTACAGTTATCCCTCCTGGCTTTACACCTTACTTTTATCCAAATGTTACTTCACATGTGTTTCAATCTGGGCTTTTGTATCAACCTCTGGGATTGGGATCAGGATGGAGGGCTAATGACTTTACGCCTCCTACTAGACCATTTCAACCATCACAGGTTCCTATTGTTCCTAGCACTAATAGGAATCGTAGGCTAAATAGGGGCATGATGAATGGGCATATGAATTCAATGGGAAAAGCTCAAACTGGTGTATATATCCCGCAACTGCAGCACTATTATCAGCCATTGGACTCAAGAGAGTACATGGCAGCTTAG 1497 0.4275 MAVPATVAAAQSSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDRILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPPGFTPYFYPNVTSHVFQSGLLYQPLGLGSGWRANDFTPPTRPFQPSQVPIVPSTNRNRRLNRGMMNGHMNSMGKAQTGVYIPQLQHYYQPLDSREYMAA 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00836 498 Gene3D - 101 179 IPR012677 -
Viun7g00836 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Viun7g00836 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Viun7g00836 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Viun7g00836 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Viun7g00836 498 FunFam Poly(A) binding protein cytoplasmic 1 like 286 375 - -
Viun7g00836 498 SUPERFAMILY RNA-binding domain, RBD 101 271 IPR035979 GO:0003676
Viun7g00836 498 SMART rrm2_1 101 173 IPR003954 GO:0003676
Viun7g00836 498 SMART rrm2_1 295 367 IPR003954 GO:0003676
Viun7g00836 498 SMART rrm2_1 192 264 IPR003954 GO:0003676
Viun7g00836 498 PANTHER RNA BINDING PROTEIN 13 76 - -
Viun7g00836 498 Coils Coil 263 283 - -
Viun7g00836 498 Gene3D - 180 273 IPR012677 -
Viun7g00836 498 SUPERFAMILY RNA-binding domain, RBD 289 382 IPR035979 GO:0003676
Viun7g00836 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Viun7g00836 498 CDD RRM4_I_PABPs 293 371 - -
Viun7g00836 498 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 390 IPR006515 GO:0003723
Viun7g00836 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Viun7g00836 498 FunFam Polyadenylate-binding protein 101 181 - -
Viun7g00836 498 SUPERFAMILY RNA-binding domain, RBD 11 99 IPR035979 GO:0003676
Viun7g00836 498 CDD RRM2_I_PABPs 98 174 IPR045305 -
Viun7g00836 498 SMART rrm1_1 13 86 IPR000504 GO:0003723
Viun7g00836 498 SMART rrm1_1 192 264 IPR000504 GO:0003723
Viun7g00836 498 SMART rrm1_1 101 173 IPR000504 GO:0003723
Viun7g00836 498 SMART rrm1_1 295 367 IPR000504 GO:0003723
Viun7g00836 498 Gene3D - 4 100 IPR012677 -
Viun7g00836 498 FunFam Polyadenylate-binding protein 4 99 - -
Viun7g00836 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Viun7g00836 498 FunFam Polyadenylate-binding protein 182 276 - -
Viun7g00836 498 Gene3D - 274 380 IPR012677 -
Viun7g00836 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00836 Viun-Chr7 7428801 7433143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00836 12 461 Eukaryotic Initiation Factors Gene Family AT2G36660 57.237 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00836 K13126 - gmx:100807057 755.747