Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00762 ATGTCGATAAACCACTACTCCATGGACCTTCCCGAAACAACACTGTGGTGGCCCCAACAACAGCCTCATCAGCAGCAACAACCCATGTTAATGGAAGCAACCCCGAATCGCTCCTCCACTTCCTGGCCCTCTGCGGAGCCTCTGGGTCTCAACCTCAACCACCAAAACGACGACGTGGAAGAAGACGAAGAGGAAGAGGACCAAACAACGACCACTACACAGCAAGAGGAAACGGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACCCCCAGCGACGTGGGGAAGCTCAACCGCCTCGTAATCCCCAAGCAGCACGCCGAGAAGTACTTCCCTCTCAGCGGTGGCGGTGGCGGTGGCGGCGAGTCGGGCGAGTGCAAGGGGCTCCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTGACCAAAGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTTGTCTTGTTCGAGCGCCACCGCGCCGACGCCCACCGCCTCTTCATCGGATGGAGGCGCCGGCGACACGGCGACACATCGCCGGTGCACGTTAGCGGCAGGGCGGTTGCGCACGGGAAGAGTGGCGACGGGAGTAGTAAGAATGAGGGTGGCGGCGGCACCGGTGGTGGTCTGGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCAGCAGCAGCTGCATAATCATCAGCCCTTGCCATACCAATATGACTGTCTTCATGCAGGACAAGGGTCCCAAGGTGAGAGAGAAAGGAGCGTAGCAGAGGGAAACAGTCCCAGTTCAAGCTCGAGTTCAAGGGTACTTAGGCTTTTTGGGGTGAACATGGAATACCAAACTGAACACGATTCTGGACCCTCCACACCCCAATGTTCCTACAATACTACCAACATGCCCTCCACACAGGGCACACAAAACCATCGCCACCAACCATACTACTACTACTAG 1020 0.5725 MSINHYSMDLPETTLWWPQQQPHQQQQPMLMEATPNRSSTSWPSAEPLGLNLNHQNDDVEEDEEEEDQTTTTTQQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGGGESGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAHRLFIGWRRRRHGDTSPVHVSGRAVAHGKSGDGSSKNEGGGGTGGGLGWTRGFYSAHPYPTHQQQLHNHQPLPYQYDCLHAGQGSQGERERSVAEGNSPSSSSSSRVLRLFGVNMEYQTEHDSGPSTPQCSYNTTNMPSTQGTQNHRHQPYYYY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00762 339 MobiDBLite consensus disorder prediction 18 94 - -
Viun7g00762 339 MobiDBLite consensus disorder prediction 303 339 - -
Viun7g00762 339 Gene3D - 74 204 IPR015300 -
Viun7g00762 339 MobiDBLite consensus disorder prediction 304 333 - -
Viun7g00762 339 ProSiteProfiles B3 DNA-binding domain profile. 86 196 IPR003340 GO:0003677
Viun7g00762 339 Pfam B3 DNA binding domain 86 195 IPR003340 GO:0003677
Viun7g00762 339 MobiDBLite consensus disorder prediction 18 51 - -
Viun7g00762 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 313 IPR044800 GO:0003700
Viun7g00762 339 MobiDBLite consensus disorder prediction 260 291 - -
Viun7g00762 339 MobiDBLite consensus disorder prediction 275 291 - -
Viun7g00762 339 MobiDBLite consensus disorder prediction 198 231 - -
Viun7g00762 339 SMART B3_2 86 196 IPR003340 GO:0003677
Viun7g00762 339 SUPERFAMILY DNA-binding pseudobarrel domain 81 195 IPR015300 -
Viun7g00762 339 CDD B3_DNA 84 186 IPR003340 GO:0003677
Viun7g00762 339 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00762 Viun-Chr7 6436491 6438754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00762 79 309 RAV Transcription Factor Family AT5G06250 50.000 2.65e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g00762 B3 1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00762 K09287 - gmx:100795470 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00762 7 6436491 6438754 Viun7g00762 7 6436491 6438754 ECH
Viun1g02565 1 35807973 35809709 Viun7g00762 7 6436491 6438754 PCT