Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00750 ATGGCTGCCACTGCTGCAGGCATAGCTTCGTTGTTTTCTTCTTCCATTAACAACATCAAATGTCTTCGTTCCAAGCACTGCTCCGTGATGGATCCCCTTACGACAGCAATGCCGTCAAACCGCATGTTTGCTGCACCTGTCTCACACTTGGTCGAACCTTTGTCCATCGGAGGTACCATGTCGCATAGGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGGTTGTTGAGGGTGATGCTGGTTTCGTTGAACAGCAGAAAGTGGAGGAGAATGAAGAGGAAGTGGTGCCAGAACAAGACTCAGATGAATCCCTTGCTAGCACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTATGGTAGCGCAGAACTTATTGAGGTTCTTTACGACAGAGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATACAGTGATAGAAAATCTTGACGGAAAAGAATTCATGGGCAGAACCTTGAGGGTGAATTTCTCTAACAAACCAAAGCCAAAAGAACCCTTGTACCCTGAGACTGAACATAAACTCTTTGTTGGGAATCTGTCATGGTCGGTAACTAATGAGATTTTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGCTTTTCAACAAAAGCAGAGATGGAATCTGCACTTGAAGCCTTGAATGATGTGGAACTAGAAGGAAGGGCTATGCGTGTGAGTTTGGCTCAAGGAAAACGTGCACAAGGCTAA 861 0.4472 MAATAAGIASLFSSSINNIKCLRSKHCSVMDPLTTAMPSNRMFAAPVSHLVEPLSIGGTMSHRLWGPRISAAVAQEEVVVEGDAGFVEQQKVEENEEEVVPEQDSDESLASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNTVIENLDGKEFMGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKAEMESALEALNDVELEGRAMRVSLAQGKRAQG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00750 286 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 193 - -
Viun7g00750 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Viun7g00750 286 PANTHER OS02G0815200 PROTEIN 64 284 - -
Viun7g00750 286 Gene3D - 74 192 IPR012677 -
Viun7g00750 286 SUPERFAMILY RNA-binding domain, RBD 196 283 IPR035979 GO:0003676
Viun7g00750 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 274 IPR000504 GO:0003723
Viun7g00750 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Viun7g00750 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Viun7g00750 286 FunFam 28 kDa ribonucleoprotein, chloroplastic 194 285 - -
Viun7g00750 286 CDD RRM2_NsCP33_like 204 279 - -
Viun7g00750 286 Gene3D - 193 286 IPR012677 -
Viun7g00750 286 SMART rrm1_1 204 277 IPR000504 GO:0003723
Viun7g00750 286 SMART rrm1_1 113 186 IPR000504 GO:0003723
Viun7g00750 286 SUPERFAMILY RNA-binding domain, RBD 105 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00750 Viun-Chr7 6348498 6350440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00750 69 282 Eukaryotic Initiation Factors Gene Family AT3G16380 30.901 1.36e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00750 - - gmx:100820203 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02610 1 36201045 36203380 Viun7g00750 7 6348498 6350440 PCT