Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00748 ATGCAGCAAACACCACACCCACAACATGCATCAAACATTAGCCCTAATTCAGTGTCACAGAAATTGCAAGAAAAAGAAACCATTTTTCTCCAAGAACAAACTTGGAACCCTAATTGCATGTATTGGGGGAAAGTTTTGGGTGGTGGAGGTGTGATGATGGAGGAGGAACTATGGAGGAAGGGACCATGGACTGCTGAAGAAGACAGGTTGCTTGTTGAATATGTCAGACTCCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGAGTTGCAGATTGAGGTGGGTGAATTATCTGAGGCCTGATCTAAAGAGGGGACAGATAACACCACAAGAAGAGAGTATAATTCTGGAGTTGCATGCAAGATGGTCAACAATTGCAAGGAGTTTACCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAAGCTAAAAGTCCCTCTGATGCAGCTGAGAAAGCAAGAAATAGAGTCATGAAGAAGCAGCAATTTCAGCAGCAACAACAGTTGCAGCAGCAGCAGCAACAGTATGAGGCACAAAAACAGCTACAGTTCAACTTTGACATGAAAGACATCATGGCCTTGCTTGAGGACAACAACACATGCAGAACACCTTATGCAGCAGCATCTCAATCTAGACAAGAAATGAACACCATGCACCAAAACAACACAGAAGAGCAAGGATTCTTTTACTCCATGCTTAATAATGGCAACATTTCTGCACCAGAAACCTCATCTGAAGAAATCTTTTTGGATGGTCTGTGGAACTTGGATCATGGCAATTTCACTGTAGCTAATGCAGCAAGCAAAGCTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 888 0.4223 MQQTPHPQHASNISPNSVSQKLQEKETIFLQEQTWNPNCMYWGKVLGGGGVMMEEELWRKGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRVMKKQQFQQQQQLQQQQQQYEAQKQLQFNFDMKDIMALLEDNNTCRTPYAAASQSRQEMNTMHQNNTEEQGFFYSMLNNGNISAPETSSEEIFLDGLWNLDHGNFTVANAASKAGLYNLVAPFC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00748 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 111 IPR017930 -
Viun7g00748 295 FunFam Myb transcription factor 60 112 - -
Viun7g00748 295 Coils Coil 174 194 - -
Viun7g00748 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 158 IPR017930 -
Viun7g00748 295 Gene3D - 117 157 - -
Viun7g00748 295 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
Viun7g00748 295 SMART sant 59 109 IPR001005 -
Viun7g00748 295 SMART sant 112 156 IPR001005 -
Viun7g00748 295 Gene3D - 60 112 - -
Viun7g00748 295 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 53 241 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun7g00748 295 CDD SANT 62 107 IPR001005 -
Viun7g00748 295 ProSiteProfiles Myb-like domain profile. 59 107 IPR001005 -
Viun7g00748 295 Pfam Myb-like DNA-binding domain 60 107 IPR001005 -
Viun7g00748 295 Pfam Myb-like DNA-binding domain 113 153 IPR001005 -
Viun7g00748 295 SUPERFAMILY Homeodomain-like 59 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00748 Viun-Chr7 6307903 6309155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00748 53 295 MYB Transcription Factor Family AT4G13480 53.731 6.29e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g00748 Myb_DNA-binding 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00748 K09422 - gmx:100795981 377.481