Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00747 ATGCAGCAAACACCACACCCACAACATGCATCAAACATTAGCCCTAATTCAGTGTCACAGAAATTGCAAGAAAAAGAAACCATTTTTCTCCAAGAACAAACTTGGAACCCTAATTGCATGTATTGGGGGAAAGTTTTGGGTGGTGGAGGTGTGATGATGGAGGAGGAACTATGGAGGAAGGGACCATGGACTGCTGAAGAAGACAGGTTGCTTGTTGAATATGTCAGACTCCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGAGTTGCAGATTGAGGTGGGTGAATTATCTGAGGCCTGATCTAAAGAGGGGACAGATAACACCACAAGAAGAGAGTATAATTCTGGAGTTGCATGCAAGGTGGGGGAACAGATGGTCAACAATTGCAAGGAGTTTACCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAAGCTAAAAGTCCCTCTGATGCAGCTGAGAAAGCAAGAAATAGAGTCATGAAGAAGCAGCAATTTCAGCAGCAACAACAGTTGCAGCAGCAGCAGCAACAGTATGAGGCACAAAAACAGCTACAGTTCAACTTTGACATGAAAGACATCATGGCCTTGCTTGAGGACAACAACACATGCAGAACACCTTATGCAGCAGCATCTCAATCTAGACAAGAAATGAACACCATGCACCAAAACAACACAGAAGAGCAAGGATTCTTTTACTCCATGCTTAATAATGGCAACATTTCTGCACCAGAAACCTCATCTGAAGAAATCTTTTTGGATGGTCTGTGGAACTTGGATCATGGCAATTTCACTGTAGCTAATGCAGCAAGCAAAGCTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 900 0.4256 MQQTPHPQHASNISPNSVSQKLQEKETIFLQEQTWNPNCMYWGKVLGGGGVMMEEELWRKGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRVMKKQQFQQQQQLQQQQQQYEAQKQLQFNFDMKDIMALLEDNNTCRTPYAAASQSRQEMNTMHQNNTEEQGFFYSMLNNGNISAPETSSEEIFLDGLWNLDHGNFTVANAASKAGLYNLVAPFC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00747 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 107 IPR017930 -
Viun7g00747 299 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 53 245 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun7g00747 299 FunFam Myb transcription factor 60 112 - -
Viun7g00747 299 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
Viun7g00747 299 Coils Coil 178 198 - -
Viun7g00747 299 SUPERFAMILY Homeodomain-like 59 154 IPR009057 -
Viun7g00747 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 162 IPR017930 -
Viun7g00747 299 Gene3D - 60 112 - -
Viun7g00747 299 Pfam Myb-like DNA-binding domain 113 157 IPR001005 -
Viun7g00747 299 Pfam Myb-like DNA-binding domain 60 107 IPR001005 -
Viun7g00747 299 Gene3D - 117 161 - -
Viun7g00747 299 FunFam MYB transcription factor 117 200 - -
Viun7g00747 299 CDD SANT 62 107 IPR001005 -
Viun7g00747 299 CDD SANT 117 158 IPR001005 -
Viun7g00747 299 SMART sant 112 160 IPR001005 -
Viun7g00747 299 SMART sant 59 109 IPR001005 -
Viun7g00747 299 ProSiteProfiles Myb-like domain profile. 59 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00747 Viun-Chr7 6307903 6309155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00747 53 299 MYB Transcription Factor Family AT4G13480 54.851 3.71e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g00747 Myb_DNA-binding 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00747 K09422 - gmx:100795981 394.045