Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00682 ATGGCTCTTACACTTCTACGTACATTCTCTCATTTTTTCACCATTGTAGCTTCACTTTCAACACTTCATCTTCTCCCCTCCTCTTCTTTCAACCCTAGAAACATTTCATTTGCTTCATACACCTTCTATTCAGATTGGTCACATGCTCTAGCCACTTGGTATGGACCTGCCCAAGGAGACGGCAGTGAAGGTGGTGCTTGTGGTTATGGAAGCTCTGTTGGGGAACCTCCATTCTCGTCAATGATATCTGCTGGAAGCCCTCTTTTGTATGATTCAGGCAAAGGTTGTGGTTCATGTTATGAGGTGAAATGCACAGGAAATAATGGATGCTCAGGGAACCCTGTGAGAGTAGTGATCACTGATGCATGCCCAGGATGTGACTCAGATGCTGAATACCACTTTGATTTGAGTGGCTCTGCTTTTGGTGCCATGGCAGTTTCAGGCCAAGATGAGAAACTACGTAATGCTGGCAAAATAAACATTCAATATAGAAGAGTTGAATGCAGTTACCCAGGTGTGTCAATAGCTTTTCGTGTGGACAGTGGATCGAACGATGAATACTTTGCAATACTGATTGAATATGAAGGTGGTGATGGTGATCTTGGGAAAGTTGAACTGAAGGAGGAAGATTCAGGTGCATGGTATACCATGGAGAGATCATGGGGTGCAGTTTGGAAACTTGACAAAGGGTCTCCACTCAATGCACCATTCTCTATCAGACTAACCACTCTTAAATCTCACAGCACCATTGTCGCTAACAATGTCATCCCTAAGGGTTGGACCCTGGCTCACACATATAGATCAATCGTCAACTTCTGA 819 0.4408 MALTLLRTFSHFFTIVASLSTLHLLPSSSFNPRNISFASYTFYSDWSHALATWYGPAQGDGSEGGACGYGSSVGEPPFSSMISAGSPLLYDSGKGCGSCYEVKCTGNNGCSGNPVRVVITDACPGCDSDAEYHFDLSGSAFGAMAVSGQDEKLRNAGKINIQYRRVECSYPGVSIAFRVDSGSNDEYFAILIEYEGGDGDLGKVELKEEDSGAWYTMERSWGAVWKLDKGSPLNAPFSIRLTTLKSHSTIVANNVIPKGWTLAHTYRSIVNF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00682 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 268 IPR007117 -
Viun7g00682 272 Gene3D - 170 272 IPR036749 -
Viun7g00682 272 SUPERFAMILY Barwin-like endoglucanases 38 172 IPR036908 -
Viun7g00682 272 CDD DPBB_EXPB_N 46 168 - -
Viun7g00682 272 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Viun7g00682 272 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Viun7g00682 272 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Viun7g00682 272 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Viun7g00682 272 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Viun7g00682 272 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Viun7g00682 272 SUPERFAMILY PHL pollen allergen 175 268 IPR036749 -
Viun7g00682 272 Gene3D - 33 169 IPR036908 -
Viun7g00682 272 Pfam Lytic transglycolase 83 163 IPR009009 -
Viun7g00682 272 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Viun7g00682 272 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Viun7g00682 272 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Viun7g00682 272 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Viun7g00682 272 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Viun7g00682 272 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Viun7g00682 272 PANTHER EXPANSIN-B3 23 272 - -
Viun7g00682 272 Pfam Expansin C-terminal domain 175 257 IPR007117 -
Viun7g00682 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 173 IPR007112 -
Viun7g00682 272 SMART dpbb_1 82 163 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00682 Viun-Chr7 5576945 5581252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00682 30 272 Expansin Gene Family AT1G65680 57.143 6.05e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00682 - - gmx:100777550 433.335