Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00677 ATGGACGTAGATGATATGGAAATGGATATTCCGCTCCCTGATGAACTCGAGTTTCTGGAATCAAATTTTCACGAACCCGAGCAAAATCAAGAAGAAGAAGAAGATCATCATTATCACTTCGCAGACCTCGAACCCCCGGCTGAACCGTACTCTCCACAACCGCCGCCAGATCTCGAGGCTCCTTCGGTGGATATCGAATCCAGCGGTCACAAGCGGTCGCGTTCGAGTTCACTTCCCGAAGAGGAAAAGACAGCGAAAGTTAGGGTTACCGTCCAGGAGGATTCCTCCACCGAGGAGGCCGCCGACGAGGATTGGCTACGCTACTCTCCTCCGCCGCAGGAGCCGGCGGCGCAGGAAACAACGTTCGCGAAGGAGAAGACATTGTCGAGATTCGCCTCGGAGATTGACGGCGAGTGCATGCCGATCACCGCGCCCAACGGCGACAGGGTTTATGCGAAGCTGACTCGGTTTCAAGGAGAAGAGCGCGTGAAGACGCTCGATTGCAATGGTTATTCTGCCGAGCTTAGTTCAGAACCAATTAATGTTATACTTGAGAGGCTGGAGCAAGAGGCTTTTGCTAAGGCCTTGGAAGCTAGTTCTGAAGGTCAAAGTGTTCCAGATGTTCCCGAAGCACAAATGGTTAATGAGCAACTTTGGGTTGATAAATATGCTCCAAAATCCTTCACCGAGCTTCTCAGTGATGAACAGACAAATCGTGAGGTACTGTTATGGTTGAAGCAATGGGATTCTGTTGTGTTTGGATCTGAAATTCGAAGCACATCAGATGATGTTTTGTCTGCTTTGAAACGCCATTCTTCTATTGTCCACAATCAGAAACCTTTGAATTCAAAGTTTCCTAGGAAGAATGGAGGATCCAAATGGAGTAACGGGGGAAGGTATGTAAATTCTGTAAGTATGGATGAGAGTGGGAGTTCAAAGAGTATTCAAGATGCATGGAGTACGAAGTCAAGGAATATTGGTCCCCCAGAACAAAAGATCCTTCTGCTAAGTGGACCACCAGGTCTTGGAAAAACAACACTAGCACATGTAGCTGCCAAGCATTGTGGATATCATGTGGTAGAGATTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCCAAGATTCTTGATGTGGTTCAAATGAACTCTGTCTTGTCTGATTCAAGGCCGAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGACGGTAAGGGTGCTGTGGAGGTTCTTCTAAAGATGATTTCTTCCGAAAGGAAGCCTGATGCGGGGAAACAAACTGTGGGCAAAGGACAACTGGAGAGAAAGTCATCAAAAAAGGGTTCAAAAACTGCTTCACTTTCAAGACCTGTGATATGCATTTGTAATGACCTATATGCACCTGCCTTAAGACCATTGCGTCAGGTAGCCAAGGTTCATATATTTGTTCAACCAACAGTCAATCGTGCAGTGAGCAGGCTGACATACATATGCAAGAAGGAGGGGATGAAAGCCAGTGCAATTGCACTCACTGCTCTTGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACACTCTCCAATTTCTCTCAAAGAAGAAAGAAGATCTCAATGTGTTTGATATTGGTTCTCAAGTAGTTGGCCAGAAGGACACATCAAAGAATGTTTTTGACATCTGGAAAGAGATTTTCCATAAGCGAAGAACAAAAAAGTCGGAAAGAAAATCTCATAGAGGGAATTCCTTTGACTTTGACTCACTGTACTCCCTTGTGTCAAAACGAGGTGATAGTGACTTGATTCTGGATGGAATTCATGAAAATGTTTTGCGGCTCAATTATCATGACCCACTGATGCAGAAAACTGTCAAGTGCTTCAACAATCTTGGAGTTTATGATCTATTGCATCAATATATAGTGCATACACATCAGATGTCCCTTTATGTATATTTGCCCCTAGTTGCAATTACTGTACATCATATAGTATCTCAAGTTCAGAAACCAAACATTGAGTGGCCAAAGTCCTATCAGAGATATCGTACAATGATGACAGAAAAAATGGACATTTTAAATAATTGGCACCACAAAATCCCACCGCATATTGCAAGGCACTTATCAGCTAGTTCCTTTGTGGAAGACTTAATTTCTCCGTTGTTACATATTCTGTCCCCACCAACTATAAGACCGGTGGCATTACAATTACTATCTGACACGGAGAAGAATGATCTTGCTCAATTAGTTAGCAAAATGGTATCATATGCTATAACATATAAAACTGTGAAATCAGATATGCTGCATCAAACCCTGAAGTCCGAATTAGCAGATGGTTTGGCACTGTCTTTTGTTCCTCCTATAAGTGACTTTATAAACTTCAAGGATTATACTTCAAATCATTATGTGCTTTCTGTAGCTATGAAGCAGCTTTTGGTACATGAGGTTGAAAAGCATAAGATTTTACAAGTTGGTGTTGACAAAACTAGGGCTTTAGCAAATGAAGGGCATGAAATCATTGAGACTGGAACTCCCAACATCCCATTAGCCAATACCAATGTTGTGGCAAGGAAATCAAATGCAAATCCCACAATAGTTTCATCCAACTTGAATACAGATAAAAGTTCAAGTGCAAAAGATATTGGAAAACCACAAAACGTGGGAAATATTAAAAAAGCAACCAGAAGTTCCTCCAGTTTCTTTGATAGGTTTAAAAAGGTAAATATTAAGGGCGTAGAAAGTAATGACAGATCTCTACCAGAAGAAGCTATCTTGGAGAAAGATCGATACCCTTTACTTTTTAAATACAATGAGGGCTTTACTAATGCAGTCAAAAGGCCTGTCCGTATTCGGGAATTTCTATCTTAA 2847 0.4211 MDVDDMEMDIPLPDELEFLESNFHEPEQNQEEEEDHHYHFADLEPPAEPYSPQPPPDLEAPSVDIESSGHKRSRSSSLPEEEKTAKVRVTVQEDSSTEEAADEDWLRYSPPPQEPAAQETTFAKEKTLSRFASEIDGECMPITAPNGDRVYAKLTRFQGEERVKTLDCNGYSAELSSEPINVILERLEQEAFAKALEASSEGQSVPDVPEAQMVNEQLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSVVFGSEIRSTSDDVLSALKRHSSIVHNQKPLNSKFPRKNGGSKWSNGGRYVNSVSMDESGSSKSIQDAWSTKSRNIGPPEQKILLLSGPPGLGKTTLAHVAAKHCGYHVVEINASDDRSTSTIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISSERKPDAGKQTVGKGQLERKSSKKGSKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVNRAVSRLTYICKKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKEDLNVFDIGSQVVGQKDTSKNVFDIWKEIFHKRRTKKSERKSHRGNSFDFDSLYSLVSKRGDSDLILDGIHENVLRLNYHDPLMQKTVKCFNNLGVYDLLHQYIVHTHQMSLYVYLPLVAITVHHIVSQVQKPNIEWPKSYQRYRTMMTEKMDILNNWHHKIPPHIARHLSASSFVEDLISPLLHILSPPTIRPVALQLLSDTEKNDLAQLVSKMVSYAITYKTVKSDMLHQTLKSELADGLALSFVPPISDFINFKDYTSNHYVLSVAMKQLLVHEVEKHKILQVGVDKTRALANEGHEIIETGTPNIPLANTNVVARKSNANPTIVSSNLNTDKSSSAKDIGKPQNVGNIKKATRSSSSFFDRFKKVNIKGVESNDRSLPEEAILEKDRYPLLFKYNEGFTNAVKRPVRIREFLS 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00677 948 SMART AAA_5 330 484 IPR003593 GO:0016887
Viun7g00677 948 Gene3D - 481 551 - -
Viun7g00677 948 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 6 947 - -
Viun7g00677 948 CDD AAA 329 432 - -
Viun7g00677 948 Pfam ATPase family associated with various cellular activities (AAA) 334 459 IPR003959 GO:0005524|GO:0016887
Viun7g00677 948 MobiDBLite consensus disorder prediction 424 445 - -
Viun7g00677 948 CDD HLD_clamp_RFC 481 539 - -
Viun7g00677 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 529 IPR027417 -
Viun7g00677 948 MobiDBLite consensus disorder prediction 18 43 - -
Viun7g00677 948 Gene3D - 216 479 IPR027417 -
Viun7g00677 948 MobiDBLite consensus disorder prediction 1 121 - -
Viun7g00677 948 FunFam Chromosome transmission fidelity protein 18 481 548 - -
Viun7g00677 948 MobiDBLite consensus disorder prediction 64 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00677 Viun-Chr7 5467496 5490510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00677 331 611 Core DNA Replication Machinery Family AT5G22010 28.283 6.86e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00677 K11269 - gmx:100785041 1541.94