Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00668 ATGGCAGAAGATATGGAAATTGATCAAATTGTGGAAGTTCCTGATACCCCAGATAGAATAACTGTGAGGGGTGATGATCAAAAACGTTTATGTAATCCTGAGAAGAGGGGCAGAGCTTTTAATGCTGCAGTTGAAATGAATAATAATTTCTGTACTACATCGTCCCCGTCAGAGAAATCTTATCCTTCTCAAAATGCTCCCATGTTTAGGAGAGGCCAAACAATGCATTCTAGTGGAGCTGAAAAGATGGAGAGAGGGAAAAGTATAAACTCCAAGGTTTCTTCTAAATCATCTCACCGAGATATTCCTGTTTTAGATTTGACTGAAGAGAATGGACCGAGCCAACAACTGAAACCAGCTTTCTCTCTTGGTGCATCAAGAGATCATGCAACTGAAGACAAGAAAGCACCCAAAGCAGCTATTGGGAACTCTTTGTCGCCAGCCATTTCAGATTCGTCTGTTACATCTAGAAATCCCTTCACTGGAAAGTGTAAACTTCCAGGTTCTAATACATCTGTGGATCGTGGCAAGGGTATTTCTCTGTCTCAGGATTATCGATCCCAAAATGATAAGCAAGTGTCTTTGCCTTCATTTGTTTCCCCCTCTCCACGAGGTAGAGAGAACAAGAGATTGGTGCGAAATGGGTGTATTTTACCTGTTAATATTGCAACAAGGGCTAAACAATTAGCTGAACAGAGAAACCTTCAAACTGAAGATGTTGAACAGAGCCATGCTGATCATGCGCTTTCTAGCAATGCAGTGTCACCAAATAGTGTTGATGACATAGTTGCTAGAGAGAGAGGCAATGGTAGAGTTAAAGGAAAGGAAGTTCGTATTTATTCTCCATTGAATGGATGCAGTGCTGGAACTATTTGCACTGCTAGCAGTAGCCCTGCCATCAATCACGAAGAGGTCACTGGTACCAGTAATGATACAAGAAATTCACTTCAACACTCTGGAGTACAAGATGGTTGGAGAACTACTCGTAATTACATGAATGCTAATCAGCACATGTATGATGTACATGGGCATCGCATGACGAGAAATAATGGTGTTGGAAGATTTACTAATAGGCGGAATACACACATAGTGGATGGAAGAAACCTCGGGAGTAATCAAAGCAGCACACATGTACATGGTTCTCAATCAGATCATACCGCACAACCAAGTTCTGTGATCATGCTAGATGCGGACCAATCAGCTGTTAACCGTCCTACTGCTGACATTCTGGCTAAAAGGCAAAGAAGACGTGAACCACCTGGGGAATCATCAAGTTCACATCCGGAAGTGGTAGAGTTGTTATCCACACCAAGGAACTCAGCAAGCTCATCTCGGAGCCGTGGCTTGGATCCTGAAGTGGTTGAGTTGGTATCCACGCCAAGGTACAGATCATCTGAAGATTTAGATGATAATGACAACAATAGCTTGGAAGCTCGAGCAAGACAAGTGGAAGCAGATGAGATTTTGGCACGTGAACTCCAAGAACAATTGTATCATGATGATTTCATTGAAAACAGAGGGATTGATGAACATTTAGCGTGGGAGTTGCACCATGCAGAGGATCTTCTGCCTACATCCATTGATAGTCCCAGCATAAATCATCCTGCAAGGCTTCCTAGGGCAAACAGACAGCCTCGTATATGGCCTAATCAGAATTCTTCTAGAAGGAGAGCTATGCCTGTAGTTTCTTTCTCTAATAGAATGTCACAGTTGAGGAGTCGTGCTACAAGTAGGACTCGGAATCCTAACATGCCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGACATGAGACTTGATATATTGGAAGCTTTAGAAAATTCAATGGGGGATTTCAGTGATATTGCTGATGGCATCTTTAACGGGCGACGTGATTTCAATGAAAGTGATTATGAAATGTTATTGGCCCTTGACGAGAGAAATCACCAACATACTGGTGCGTCTACTAATCTGATCAATAGCCTTCCACAGTCCACCATCCAGAATGACAACATGACAGAGCCATGTGCTATATGTCTTGAGACCCCAGTCAAGGGAGAAACTATTCGCCACCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCAGAGGAAAACATCATGCCCCGTCTGCAAATCATCAATCACCTAA 2157 0.4288 MAEDMEIDQIVEVPDTPDRITVRGDDQKRLCNPEKRGRAFNAAVEMNNNFCTTSSPSEKSYPSQNAPMFRRGQTMHSSGAEKMERGKSINSKVSSKSSHRDIPVLDLTEENGPSQQLKPAFSLGASRDHATEDKKAPKAAIGNSLSPAISDSSVTSRNPFTGKCKLPGSNTSVDRGKGISLSQDYRSQNDKQVSLPSFVSPSPRGRENKRLVRNGCILPVNIATRAKQLAEQRNLQTEDVEQSHADHALSSNAVSPNSVDDIVARERGNGRVKGKEVRIYSPLNGCSAGTICTASSSPAINHEEVTGTSNDTRNSLQHSGVQDGWRTTRNYMNANQHMYDVHGHRMTRNNGVGRFTNRRNTHIVDGRNLGSNQSSTHVHGSQSDHTAQPSSVIMLDADQSAVNRPTADILAKRQRRREPPGESSSSHPEVVELLSTPRNSASSSRSRGLDPEVVELVSTPRYRSSEDLDDNDNNSLEARARQVEADEILARELQEQLYHDDFIENRGIDEHLAWELHHAEDLLPTSIDSPSINHPARLPRANRQPRIWPNQNSSRRRAMPVVSFSNRMSQLRSRATSRTRNPNMPSRGRGPRFPLDMDLDMRLDILEALENSMGDFSDIADGIFNGRRDFNESDYEMLLALDERNHQHTGASTNLINSLPQSTIQNDNMTEPCAICLETPVKGETIRHLPCLHKFHKDCIDPWLQRKTSCPVCKSSIT 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00668 718 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Viun7g00668 718 Pfam Ring finger domain 673 714 IPR001841 -
Viun7g00668 718 MobiDBLite consensus disorder prediction 364 388 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 233 261 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 428 447 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 566 584 - -
Viun7g00668 718 SUPERFAMILY RING/U-box 661 717 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 51 100 - -
Viun7g00668 718 SMART ring_2 673 713 IPR001841 -
Viun7g00668 718 MobiDBLite consensus disorder prediction 124 207 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 51 72 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 409 423 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 145 201 - -
Viun7g00668 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 718 IPR013083 -
Viun7g00668 718 PANTHER SI:CH211-59O9.10 316 718 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 566 593 - -
Viun7g00668 718 FunFam RING/U-box superfamily protein 638 718 - -
Viun7g00668 718 CDD RING-H2_PA-TM-RING 672 714 - -
Viun7g00668 718 MobiDBLite consensus disorder prediction 409 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00668 Viun-Chr7 5400773 5409705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00668 472 718 C3H Transcription Factor Family AT1G04790 48.699 5.45e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00668 - - gmx:100796218 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00668 7 5400773 5409705 Viun7g00668 7 5400773 5409705 ECH