Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00664 ATGGCGGTGGTTTCTTCTTCTTCTTCTTATTCGATGTGGGTCTTCTTTTTTCTCCTTCTGGCGCTGTTCATTCACCTACAAGCAGCCATGGCCACCACCACCACCACCACCACACCACAGATCTCTCACCTCAGGAATGTTGAAGTGGAAAAACACAGGTTGCCGAGCTTGCAGAACTCGTCAATGGCGGAAAGGGCACTAGAGGCCGAAAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAAAATAGTACAGAGAGAAGGAATCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAACGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGCAGAAATGCCATTGGTGGTCGTGATGGAAAGTTCTATGTTGTGACTGACCCCAGGGATGATGACCCTGTGAACCCCAAACCTGGCACTCTTCGCCATGCTGTGATCCAGGACAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTAATCATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGTGCACATTGCTAATGGGGCATGTATCACAATCCAGTTTGTTACCAATGTCATCATCCATGGCCTGCATATTCATGATTGCGTACCTACTGGAAATGCCATGGTGAGGAGCTCCCCAACCCACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTAGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCTCACTGTGCTGATGGCCTTGTGGATGCTGTCTTGGGCTCAACAGCCATTACTATTTCAAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGATTCTTACACAAGAGACAAGCTCATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACACGGATATTTTCACGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATTAACAGCCAGGGAAACCGATACAATGCTCCTGTTAACCCTTTTGCAAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGATCAGAGGGAGATTTGTTGCTGAATGGTGCCTTTTTCACCCCATCAGGAGCTGGAGCCTCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGAGCAAAATCTTCTTCCATGGTTGGTACCATAACTTCCAATGCTGGTGCACTCGGTTGCAAAAGAGGCCGTCAGTGCTAG 1377 0.4858 MAVVSSSSSYSMWVFFFLLLALFIHLQAAMATTTTTTTPQISHLRNVEVEKHRLPSLQNSSMAERALEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFVTNVIIHGLHIHDCVPTGNAMVRSSPTHFGWRTMADGDAISIFSSSHIWVDHNSLSHCADGLVDAVLGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALGCKRGRQC 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00664 458 Pfam Pectate lyase 191 373 IPR002022 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 256 277 IPR018082 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 429 452 IPR018082 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 156 181 IPR018082 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 192 208 IPR018082 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 358 377 IPR018082 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 132 149 IPR018082 -
Viun7g00664 458 PRINTS Pollen allergen Amb family signature 400 424 IPR018082 -
Viun7g00664 458 PANTHER PECTATE LYASE 18-RELATED 71 456 IPR045032 GO:0030570
Viun7g00664 458 SUPERFAMILY Pectin lyase-like 84 452 IPR011050 -
Viun7g00664 458 Gene3D - 109 451 IPR012334 -
Viun7g00664 458 SMART amb_all 184 381 IPR002022 -
Viun7g00664 458 FunFam Pectate lyase 109 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00664 Viun-Chr7 5319683 5325116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00664 40 458 Polysaccharide Lyase AT4G13710 80.425 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00664 K01728 - gmx:100781845 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00664 7 5319683 5325116 Viun7g00664 7 5319683 5325116 ECH