Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00621 ATGGCTATGTTTGATCTCAATGTTGACATCAACCATGATGCTGATGCTGGCTCAAGCTGTGCTCAAAAGGAGGCGAAACTGCAGAGTTTTCCAACTGAAATCTCAGATTCCAGAACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCAAACAATTCCTCTCCCTTGATTTTTGACATTCTGAAGAAAGAGAGGGGTGGCTCAGAGTTTGATGCTGCCACTGAAGCCAACAAGGAGCAAAACATGGCAGAGAAGGGAGAGATTGTGACAAGGACCCTTTTCCCTGTGACTTCTTCTGATAAAGGAGGAAGAGTACCTGATTTGAAATCTGGGTTGTGGGGGAAGACTCAATTGTTGAACCTCTCCTTTCCTGAATCTGATGAACAAAATGGACAGAGAAACTTACAGCAGAAGCTACCACATGTGAGGAAAAATAGGAGAGGACCAAGGTCTCGCAGTTCTCAATACCGAGGTGTCACTTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTCTATCTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCGTATGATAGGGCTGCTATTAAGTTTCGTGGAGTAGATGCTGATATAAACTTTAGTTTGAGAGATTATGAGGAGGATTTGAAGCAGATGAGAGGCTTGAGTAAGGAAGAGTTTGTGCTTGTTCTTCGTCGACAAATCAATGGAATCTCGAGGAGAAGTGCAACATACAGAAGTGCATTAGCTCTTCATAAAGGTGGTCAAGGAGAACCAAGTATGGGACCATTTATTGGCAAGACATTTTATCCCAAGTCTTCCATCAAGTATGATGAAGGAAAAGTGGAGACAAGTTTTAGACCTTTTTCCTCTAAGGAGCAAATAATTGCAAATTCCAGTATAGCAGCAGGCACTTGCCATAATCTTGATTTGAGCCTGGGGATTTCTCCATCTTCTAAAAAGTTGAAGAATTGTGATTATGGTGGAGAGTATTCCTTTGGATGTATGGCTTGTAAGATACCCCAGGAAATAGGATCAATGGAGAAGAGCATGGTGGAGAGAATAAGAAGTGTTCCTCTGCAAAAAATTTCGAACTTGGGTTCACATCTTTGCAGCAGCAATGGCAACATAGGGTCAAGGGCTTTGCAATCAAATGCAGCATCATCAGGATTCGTGTCTTCTTCTTCTGGCTGTATCATCAGCCACACTTCCAATCACCACACATATTAA 1248 0.4327 MAMFDLNVDINHDADAGSSCAQKEAKLQSFPTEISDSRTSNSSVWNPADEDSSNNSSPLIFDILKKERGGSEFDAATEANKEQNMAEKGEIVTRTLFPVTSSDKGGRVPDLKSGLWGKTQLLNLSFPESDEQNGQRNLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLRDYEEDLKQMRGLSKEEFVLVLRRQINGISRRSATYRSALALHKGGQGEPSMGPFIGKTFYPKSSIKYDEGKVETSFRPFSSKEQIIANSSIAAGTCHNLDLSLGISPSSKKLKNCDYGGEYSFGCMACKIPQEIGSMEKSMVERIRSVPLQKISNLGSHLCSSNGNIGSRALQSNAASSGFVSSSSGCIISHTSNHHTY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00621 415 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Viun7g00621 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 277 - -
Viun7g00621 415 MobiDBLite consensus disorder prediction 126 141 - -
Viun7g00621 415 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Viun7g00621 415 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Viun7g00621 415 MobiDBLite consensus disorder prediction 18 57 - -
Viun7g00621 415 MobiDBLite consensus disorder prediction 126 158 - -
Viun7g00621 415 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Viun7g00621 415 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Viun7g00621 415 CDD AP2 157 213 IPR001471 GO:0003700|GO:0006355
Viun7g00621 415 MobiDBLite consensus disorder prediction 22 57 - -
Viun7g00621 415 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00621 Viun-Chr7 4959251 4963383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00621 8 273 AP2-EREBP Transcription Factor Family AT2G28550 51.064 1.30e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g00621 AP2 2.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00621 K09284 - gmx:100776138 602.053