Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00600 ATGCTTCCTCTCACCATCTTCGAAACCAACCCACTTCTTCATTTTCTTCAATCTTTTCCTACCTTTTTCACATTTATAATCTCCTCACTCCCATTTTCCACTCACCCAATTCAAATTCTTCACCTTTCCAACTTCACAACACCAAAACTTTTCTCCCTTTTTCCCTCACTTCAACACACCATGCAAACCTTTGAACCCAACAATTTCACCTTTTTCATCCCAAATATCACTGATTACTCACTACCCCAAGATCTTCAATTTCAAGCTCACATGACCAACAACAACAACAACACACCAATGAACCAAGTCTCATCTTCCTCCAAGCCTCCAAGATCCTCAAATCTCAGCAACCGCAAACCCTCTTTGAAAAACATCACAATCCCTTCCATATCTTCAGGTCTTGTGATTCCGACAACATCATCAACAACATCAATTACAACCTTGTATAACAGCAACAGTCAAGTTTCTTGTTCTTTGGATGATGCCAACAATAGCAGAGAGGATGATAAGCACTATAGAGGGGTTAGGAGAAGGCCTTGGGGGAAGTTTGCTGCAGAAATTCGGGACCCCAATAGAAAGGGTTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGAGAGTCTGAAGAATCGGTTTCAATTATGAAGGTTGGTGTGAAGAGAGAAAGAGAGGAAGAAAGTGAAGGGAACGAGGAAAGTAATAATAACAATAAGGTTGTGAAGAAAGAAGAGTGCTCTCCCAAAGGGGTGTGCCCTTTGACTCCATCATGTTGGAAAGGGTTTTGGGACACTGATGTTATGGGAACCATCTTTAGTGTGCCTCCTTTGTCGCCGTTATCTCCATTAATGGTTGTTTGA 939 0.4228 MLPLTIFETNPLLHFLQSFPTFFTFIISSLPFSTHPIQILHLSNFTTPKLFSLFPSLQHTMQTFEPNNFTFFIPNITDYSLPQDLQFQAHMTNNNNNTPMNQVSSSSKPPRSSNLSNRKPSLKNITIPSISSGLVIPTTSSTTSITTLYNSNSQVSCSLDDANNSREDDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGESEESVSIMKVGVKREREEESEGNEESNNNNKVVKKEECSPKGVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00600 312 PANTHER DNA-BINDING DOMAIN 108 265 IPR044808 GO:0003700|GO:0009873
Viun7g00600 312 Gene3D AP2/ERF domain 170 231 IPR036955 GO:0003700|GO:0006355
Viun7g00600 312 MobiDBLite consensus disorder prediction 247 273 - -
Viun7g00600 312 PRINTS Ethylene responsive element binding protein signature 172 183 IPR001471 GO:0003700|GO:0006355
Viun7g00600 312 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
Viun7g00600 312 SUPERFAMILY DNA-binding domain 171 231 IPR016177 GO:0003677
Viun7g00600 312 CDD AP2 170 229 IPR001471 GO:0003700|GO:0006355
Viun7g00600 312 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Viun7g00600 312 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Viun7g00600 312 MobiDBLite consensus disorder prediction 91 124 - -
Viun7g00600 312 MobiDBLite consensus disorder prediction 247 272 - -
Viun7g00600 312 FunFam Ethylene-responsive transcription factor 2 170 231 - -
Viun7g00600 312 Pfam AP2 domain 171 221 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00600 Viun-Chr7 4685154 4686416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00600 112 309 AP2-EREBP Transcription Factor Family AT5G51190 49.754 6.70e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g00600 AP2 6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00600 K09286 - gmx:100795866 276.559