Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00599 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACACCTCTTAGGTGAAAACATCTCAACCTCCTTTTTCTCCAATTTCTCCAACCTCAACCCTGTGAAGCTTGAAGCCCCTTCATCACCTTCATCACCACACTTTGATTTTGATTTCTCAGACAACACCACCTTCTTCACTTTCCTTGAAGGCTATGACTTGGTTGCAGACATGGAGTTTCTCGATCACAAAACCATCATAAACTCCACATCAACACCCCCCTTAAACAAATGCAATTCTCCTCAACCATTGGTGTCATCATCAGAATCAGAAGAGAAAGCAAAGAAGGTAGAACATGATGAAGCAAAACGTTATAGGGGAGTTAGGAGAAGACCTTGGGGTAAGTTTGCTGCAGAAATCCGTGACCCTACAAGGAAAGGTACAAGGGTTTGGCTTGGAACTTTCGACACTGAAATTGATGCTGCTAAGGCTTATGATTCTGCTGCTTTCAAGATGAGGGGTCACAAAGCGATTCTTAACTTCCCTCTTGAGGCTGGAGTGTCTGATCCAAAACCAAACACTTGTGGCAGGAAAAGAAGAAGAGACACCCTTGAATTGGAGCTCCCACAGGTCCATCTTCATCATGGTGTATCATGA 639 0.4366 MTTAEETSNLDLIRQHLLGENISTSFFSNFSNLNPVKLEAPSSPSSPHFDFDFSDNTTFFTFLEGYDLVADMEFLDHKTIINSTSTPPLNKCNSPQPLVSSSESEEKAKKVEHDEAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDSAAFKMRGHKAILNFPLEAGVSDPKPNTCGRKRRRDTLELELPQVHLHHGVS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00599 212 Pfam AP2 domain 118 169 IPR001471 GO:0003700|GO:0006355
Viun7g00599 212 FunFam Ethylene-responsive transcription factor 2 117 178 - -
Viun7g00599 212 MobiDBLite consensus disorder prediction 85 114 - -
Viun7g00599 212 PANTHER DNA-BINDING DOMAIN 90 184 IPR044808 GO:0003700|GO:0009873
Viun7g00599 212 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Viun7g00599 212 PRINTS Ethylene responsive element binding protein signature 158 178 IPR001471 GO:0003700|GO:0006355
Viun7g00599 212 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Viun7g00599 212 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Viun7g00599 212 MobiDBLite consensus disorder prediction 85 102 - -
Viun7g00599 212 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Viun7g00599 212 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
Viun7g00599 212 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00599 Viun-Chr7 4666988 4667923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00599 1 206 AP2-EREBP Transcription Factor Family AT5G07580 40.278 6.50e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g00599 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00599 - - gmx:100305726 284.263