LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g00589	ATGAACGAAAGATCTACATTGTGTACATGGGTGATCTTCCCAAAGGCTTCCAATCCACGGAATCACTTCACATCACTATGCTTCGAAATATCACCGGCAGGATTGGACGGTGTGGTTTCTGTTTTCCCAAACAAAAGGAATGAACTGCAGACAACAAGATCTTGGGACTTCGTAGGTTTATCTGAGTGTGTGAAGAGAAGAAGCGCAGAGAGTGACATAATTGTTGGAGTAATAGATACTGGAATTTGGCCAGAATCCGACAGTTTTAACGATGAAGGATTTGGTCCTCCTCCACAAAAATGGAAGGGCTCTTGCAATAACTTTCCGTGCAACAACAAAATAATTGGAGCTAAATACTTTCGTACGAGCCATTCATACGGAGAAGAAGATGACTTCATATCTCCAAGGGATTCAAATGGACATGGCACTCACTGTGCATCCATTGTTGGCGGAAACCCAGTTGAGTTCGCAAGTTTCTTTGGGCTTGCGTCAGGAACAGCACGAGGAGGAGTTCCGTCAGCACGCATTGCCGTCTACAAACCTTGTTGGTCATCTGGTTACTGTGATGATGCAGACATTCTTCAAGCATTTGTTGAAGCCATTGAAGATGGTGTTGACATCATTTCCATTTCAATCGGACCTACCTACGTACAATACAACGACTATTTCAATGATATAAATGCCATTGGGGCTTTCCATGCTATGAAGAAAGGTATACTAACGTCCACTTCTGCTGGTAACAGCGGTCCAGAGTATTATACAATATCCAAAAATGCGCCATGGGCACTTTCTGTAGCAGCTACCACCATTGACAGAAGGATTCTTACCAGTGTTCGGTTGGGTGATGGCACAGTTTATCAGGGAGTTTCGGTTGATATATTTGATCCAAATTACGAGAGCTATCCATTGATTTATGCTGGAAATGCACCAAACATCGTTGGTGGATACAACAGTTCCATATCCCGGTTATGCCAAGAAAATTCCTTAGACAAGAATTTGGTGAAAGGAAAAATTGTTTTGTGTGATGGTTTGCAAGAATCTTCATATGTGGGATTGGTTTCTGGAGCAGCTGGTATTTTATATAGAAGTTTAGTGCCAAAAGATGTCGCATTTACATATGGATGGTCAGTAGTTCACCTTCGCCACATAGATGGGGCTCGCATACATTCTTACATAAGTCGATCAAGTAATCCCACTGCTACCATATTTAAGAGTCATGAAGATGAAGACTCAGAAGCCCCTTACATAGCTCAATTCTCATCTAGAGGACCAAATGCCATAACTCCAAACATTCTTAAGCCTGATTTAGCTGCTCCAGGGGTTGACATTTTAGCTGCGTGGTCTCCAATTTCACCTGTTTTTAATGTCAGAGGAGATATTGGAGTTGCAGAGTATAGTATAATGTCTGGCACTTCAATGGCATGCCCTCATGCCACTGCTGCAGCAGCTTATATCAAATCATTTCATCCTAATTGGTCCCCTGCTTCAATCAAATCAGCACTAATGACCACTGCTACCCCAATGAGTCCATTACTAAATCCTGAAGCTGAATTTGCTTATGGTGCTGGCCAGATCAACCCTATGAAGGCACTGAATCCTGGGTTAGTTTATGATGCAAATGAAAGTGATTATGTTAACTTTCTATGCAGCCAAGGATATGATACTAAAAACTTGCAAACTATTACAAACGATGATAGTAGTTGTACACAACAACCTAATGATGGAATGGGTTTGGATCTTAATCTGCCATCTTTTGCTCTTTCCATGTACACTTCAATACCTTTTAGTAGCACTTTTCATAGAACCGTTACCAATGTCGGAGCAAACACATCAATATACAAAGCTAGGCTAAATGTACCTTCATCTTCGTTAAAGTTGAAAGTAGAGCCAGACGTTATGTCCTTCTCATATGTGGGTGAAAAGAAGTCCTTCACTCTTGTGATTGAAGGGACACTTGATGTGGAGACAGTTTCGTGTTCTTTGATTTGGGACGATGAAACTTTTCAAGTAAGGAGCCCTATTGTTGTTTTTCCTTTGTTTACTTCAAAAGAAGAATCTGAGGGAGAGTGA	2070	0.413	MNERSTLCTWVIFPKASNPRNHFTSLCFEISPAGLDGVVSVFPNKRNELQTTRSWDFVGLSECVKRRSAESDIIVGVIDTGIWPESDSFNDEGFGPPPQKWKGSCNNFPCNNKIIGAKYFRTSHSYGEEDDFISPRDSNGHGTHCASIVGGNPVEFASFFGLASGTARGGVPSARIAVYKPCWSSGYCDDADILQAFVEAIEDGVDIISISIGPTYVQYNDYFNDINAIGAFHAMKKGILTSTSAGNSGPEYYTISKNAPWALSVAATTIDRRILTSVRLGDGTVYQGVSVDIFDPNYESYPLIYAGNAPNIVGGYNSSISRLCQENSLDKNLVKGKIVLCDGLQESSYVGLVSGAAGILYRSLVPKDVAFTYGWSVVHLRHIDGARIHSYISRSSNPTATIFKSHEDEDSEAPYIAQFSSRGPNAITPNILKPDLAAPGVDILAAWSPISPVFNVRGDIGVAEYSIMSGTSMACPHATAAAAYIKSFHPNWSPASIKSALMTTATPMSPLLNPEAEFAYGAGQINPMKALNPGLVYDANESDYVNFLCSQGYDTKNLQTITNDDSSCTQQPNDGMGLDLNLPSFALSMYTSIPFSSTFHRTVTNVGANTSIYKARLNVPSSSLKLKVEPDVMSFSYVGEKKSFTLVIEGTLDVETVSCSLIWDDETFQVRSPIVVFPLFTSKEESEGE	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g00589	689	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	35	676	IPR045051	-
	Viun7g00589	689	FunFam	Subtilisin-like protease SBT1.5	72	297	-	-
	Viun7g00589	689	ProSitePatterns	Serine proteases, subtilase family, serine active site.	470	480	IPR023828	-
	Viun7g00589	689	Pfam	Fibronectin type-III domain	579	676	IPR041469	-
	Viun7g00589	689	Gene3D	-	271	409	-	-
	Viun7g00589	689	Gene3D	Peptidase S8/S53 domain	72	544	IPR036852	GO:0004252\|GO:0006508
	Viun7g00589	689	Pfam	Subtilase family	71	523	IPR000209	GO:0006508\|GO:0008236
	Viun7g00589	689	PRINTS	Subtilisin serine protease family (S8) signature	137	150	IPR015500	-
	Viun7g00589	689	PRINTS	Subtilisin serine protease family (S8) signature	70	89	IPR015500	-
	Viun7g00589	689	PRINTS	Subtilisin serine protease family (S8) signature	469	485	IPR015500	-
	Viun7g00589	689	ProSiteProfiles	Serine proteases, subtilase domain profile.	54	531	-	-
	Viun7g00589	689	Gene3D	-	548	677	-	-
	Viun7g00589	689	CDD	PA_subtilisin_like	277	402	-	-
	Viun7g00589	689	CDD	Peptidases_S8_3	48	506	IPR034197	-
	Viun7g00589	689	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	141	151	IPR022398	-
	Viun7g00589	689	SUPERFAMILY	Subtilisin-like	49	535	IPR036852	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g00589	Viun-Chr7	4572445	4581482	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g00589	33	679	Subtilisin-like Serine Gene Family	AT5G59100	47.050	0.0	578

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g00589	-		-	vun:114190001	1335.47