Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00575 ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCCGGTGCAAGGCATCTGATAAAATTATTGACATAAAGCAGAAGTTGCAAGAACTTGTTGATCAGCCAACTAGTAATCAACGGTTAATTCTACCTGGTACAGGGGAAGTATTAGAAGACTCTAAGACTTTGGCAGATCAAAAGGTAGAAAATGATGCCGTTGTAGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCTAACGATTTCTACCAAGCTCGGGATGCAGATGGTGCGAGTTGGTAA 312 0.4071 MDMYIRVKRSKTTYFIRCKASDKIIDIKQKLQELVDQPTSNQRLILPGTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGASW 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00575 103 Gene3D - 1 92 - -
Viun7g00575 103 PANTHER OS03G0364000 PROTEIN 1 101 - -
Viun7g00575 103 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Viun7g00575 103 SMART ubq_7 3 75 IPR000626 GO:0005515
Viun7g00575 103 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Viun7g00575 103 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00575 Viun-Chr7 4489404 4494267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00575 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 1.74e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00575 K03873 - gmx:100499885 196.438