Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00570 ATGGAGAACTCTGAGCTCTATCAGTTCCTTTCAAACACCAATCATTCTTTCTTCCCTAAACCTGAATCGTCCACCATGCAACAAAGCTTCTCTGCTTCCTTTTCTTCTTACCCTTTGGAACCATTTCATGCACCACCTCTTCAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAACGCACACCTCAATAAGCTTCGCACTCTTCTTCCTTGTAACTCCAAGACCGACAAGGCTTCACTCTTGGCTAAGGTGGTCGAAAGGTTGAGGGAGTTGAAGCAGCGGATGTCTGAAATAACCAATTCCGAAACGTTTCCTTCGGAGACCGACGAGATCTCCGTTCTGTCCACCAGCGGTGACGAGGGTGGCGGTGACGGACGAGTCATATTCAGGGCCTCGTTGTGCTGTGAGGACCGCTCCGACCTCATCCCCGACCTCGTCGAAATCCTCAAGTCTCTGCACCTCACAACGCTCAAAGCCGAAATCGCAACGCTCGGCGGAAGAACCCGCAACGTTCTCGTGGTGGCCACCGACAAAGATCACGGCGTTGAATCGATCCACTTCCTGCACAGTTCGTTGAACTCTCTGCTACAACACAACGCCACATCCAAACGACGCCGTCTCGTGGGACCAAAGTTCATCGCTTAA 678 0.5103 MENSELYQFLSNTNHSFFPKPESSTMQQSFSASFSSYPLEPFHAPPLQDKALAALRNHKEAEKRRRERINAHLNKLRTLLPCNSKTDKASLLAKVVERLRELKQRMSEITNSETFPSETDEISVLSTSGDEGGGDGRVIFRASLCCEDRSDLIPDLVEILKSLHLTTLKAEIATLGGRTRNVLVVATDKDHGVESIHFLHSSLNSLLQHNATSKRRRLVGPKFIA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00570 225 CDD ACT_UUR-ACR-like 143 191 - -
Viun7g00570 225 SMART finulus 59 108 IPR011598 GO:0046983
Viun7g00570 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Viun7g00570 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 111 IPR036638 GO:0046983
Viun7g00570 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Viun7g00570 225 Coils Coil 92 112 - -
Viun7g00570 225 PANTHER TRANSCRIPTION FACTOR BHLH30 25 219 IPR045847 GO:0003700|GO:0006355
Viun7g00570 225 Gene3D - 48 114 IPR036638 GO:0046983
Viun7g00570 225 FunFam transcription factor bHLH30 48 111 - -
Viun7g00570 225 CDD bHLH_AtAIG1_like 48 124 - -
Viun7g00570 225 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00570 Viun-Chr7 4425981 4428289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00570 6 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 58.636 6.44e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g00570 HLH 9.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00570 - K22484 pvu:PHAVU_007G243000g 365.54