LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g00568	ATGGGAATCTGCCATGGAAAACCCATCGAGACCCAGCAGAGTGAGAGAGAAAACCCAGAATTCCCGAACGAAGTTCCGTCATCAACAACAACAACGAACCCCACCAAACCCTCGAAATTCCCATTCTACAGCCCGAGCCCTTTGCAGAGTTGGTTCAAAAACTCGCCGGCGAACTCAAACCCTAGCAGCGTGAGTTCCACACCGTTGAGGATCTTCAAGCGTCCCTTCCCTCCTCCGTCGCCGGCCAAGCACATTCGCGCGCTCCTCGCCCGGCGCCACGGCTCCGTGAAGCCGAACGAAGCCTCCATACCTGAAGGCAGCGAGTGTGAGATTGGGCTGGATAAGAGCTTCGGCTTCGCCAAACAGTTCTCGGCCCATTACGAGCTCGCCGAAGAAGTGGGCCGCGGCCATTTCGGCTACACCTGCTCCGCCAAGCCCAAGAAGGGCCCCCTCAAAGGCATCGACGTTGCCGTCAAAGTCATTCCAAAATCCAAGATGACTACAGCAATTGCCATTGAGGATGTAAGGAGAGAAGTGAAGATATTGCGGGCTCTAACAGGACATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGAAAACGTTTATATAGTTATGGAGTTATGCAAAGGAGGGGAATTGCTAGATAGGATTCTTTCCAGGGGTGGAAAGTACCCAGAAAATGATGCCAGAGTAGTTATGATCCAAATATTAAGTGTCGTAGCATTTTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGAAAATTCCATGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTGAAGCCAGGTCTGGCATATTCCCTGCTTTCATATTTCTGTTGTTTTATTAACAGAGAATATAAACAACTAGTGGTAACAATCCGATTTTCTTTTTCAGATGAGAGGTTGAATGATATTGTTGGAAGTGCTTATTATGTAGCCCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGGAGCCGTCCCTTTTGGGCTCGGAGCGAATCTGGTATATTTCGGGCTGTACTTAAGGCAGATCCAAGTTTTGATGAGGCTCCTTGGCCTTCTTTATCTGCTGATGCAAAAGATTTTGTAAAGAGGTTGTTGAATAAGGATTATCGTAAAAGATTGACTGCAGCTCAGGCACTAAGTCATCCATGGCTGGTGAATCATCATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCGTACATTTGCTCATCTTCTTTACGTAAATCTGCTTTACGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACACTGTTAGGGCCAAACAAGAGTGGATTAATCTCTATGCAGAACTTTAAGACGGCTGTTTTGAGGAGCTCCACAGATGCTTCAAAGGATTCAAGGGTCTTAGATTACGTGAATATGGTTAGTTCTATCCAATATAGGAAACTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTATGCACCAACTAGAGGGAATGGAGAGCTGGGAGCAGCATGCAAGGCGAGCCTATGAGCTTTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAGGAACTTGCCTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAAGATTGGATAAGGCACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGTGCATTTCAGAAGGCTTGA	1836	0.451	MGICHGKPIETQQSERENPEFPNEVPSSTTTTNPTKPSKFPFYSPSPLQSWFKNSPANSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEIGLDKSFGFAKQFSAHYELAEEVGRGHFGYTCSAKPKKGPLKGIDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVYIVMELCKGGELLDRILSRGGKYPENDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSMLKAIDFGLSDYVKPGLAYSLLSYFCCFINREYKQLVVTIRFSFSDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARSESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDMRIPLDMIIHKLVKAYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISMHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g00568	611	FunFam	CDPK-related kinase 3	119	290	-	-
	Viun7g00568	611	Gene3D	Phosphorylase Kinase; domain 1	120	215	-	-
	Viun7g00568	611	Gene3D	-	442	602	-	-
	Viun7g00568	611	Pfam	Protein kinase domain	127	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g00568	611	ProSitePatterns	Protein kinases ATP-binding region signature.	133	159	IPR017441	GO:0005524
	Viun7g00568	611	FunFam	Calcium-dependent protein kinase SK5	329	424	-	-
	Viun7g00568	611	MobiDBLite	consensus disorder prediction	15	69	-	-
	Viun7g00568	611	SUPERFAMILY	EF-hand	448	602	IPR011992	-
	Viun7g00568	611	PANTHER	SERINE/THREONINE-PROTEIN KINASE	114	587	-	-
	Viun7g00568	611	ProSiteProfiles	Protein kinase domain profile.	127	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g00568	611	SMART	serkin_6	127	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun7g00568	611	SUPERFAMILY	Protein kinase-like (PK-like)	126	445	IPR011009	-
	Viun7g00568	611	FunFam	CDPK-related kinase 1	431	603	-	-
	Viun7g00568	611	MobiDBLite	consensus disorder prediction	1	77	-	-
	Viun7g00568	611	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Viun7g00568	611	Gene3D	Transferase(Phosphotransferase) domain 1	216	441	-	-
	Viun7g00568	611	FunFam	CDPK-related kinase 1	120	215	-	-
	Viun7g00568	611	CDD	STKc_CAMK	126	418	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g00568	Viun-Chr7	4397458	4406332	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g00568	1	609	EF-hand Containing Proteins	AT3G50530	68.246	0.0	870

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Viun7g00568		Pkinase	8.9e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g00568	-		-	gmx:100783262	1043.11