Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00553 ATGTCAAATAGTAGGAACACACATTGGTGTTACAGTTGCAGGAGGCCGGTTCGGCTGGGAAGGCGAGATGTGGTTTGTCCTAGCTGCAATGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTGAATCCTTTTGATTTGTTTGGAATGGACAACAATGAAGAACGAGATCAAAGGGTTGGACTCATGGAAACCTTCTCTGCTTTTATGAGGCATCAAATGGCAGACAGGGGCAGAAGTCGTGACATCATCAGGGCACAAACAGATTCAAATGCTGAACACAGTGCAGGGTATGCTCCTCTGTTGATCTTTGGTGGCCAAATACCTTTCAGATTGTCTGGCCATGGTGGCTTTGAAGCTCTCTTTAACGGGGCCCCTGGAATTGGTCTCACACGAGGTAACACAGGTGATTATTTTGTTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCAGCACCAGCATCAAGATCCTCAATTGATGCTATGCCTACTATCAAGATCACACAGAGGCATCTTCGATCAGACTCACATTGTCCTGTGTGCAAAGATAGATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTGTATCACTCAGATTGCATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGCCAAGAACTGCCACCACAAGGATTGAATTTGAGTAGTAATAACCGAGGCACAAATGGTAGAAGTAGAAGTGGAAGGGTAAGTAGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCTAGCAGTAATGATGAAGCAACCGGAAGCAGCACACAAGCACCAACCATCCCAGAGAATAGCCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA 933 0.4577 MSNSRNTHWCYSCRRPVRLGRRDVVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRVGLMETFSAFMRHQMADRGRSRDIIRAQTDSNAEHSAGYAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFVGPGLEELFEQLSANNRQGPAPASRSSIDAMPTIKITQRHLRSDSHCPVCKDRFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLNLSSNNRGTNGRSRSGRVSSSGRESQGRRNPFSFLWPFRSSHSSSNDEATGSSTQAPTIPENSHHAGYSGWPFE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00553 310 MobiDBLite consensus disorder prediction 272 298 - -
Viun7g00553 310 CDD RING-H2_RNF126-like 187 228 - -
Viun7g00553 310 MobiDBLite consensus disorder prediction 232 310 - -
Viun7g00553 310 SMART ring_2 187 227 IPR001841 -
Viun7g00553 310 MobiDBLite consensus disorder prediction 233 264 - -
Viun7g00553 310 SUPERFAMILY RING/U-box 167 234 - -
Viun7g00553 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Viun7g00553 310 FunFam E3 ubiquitin-protein ligase RING1-like 150 234 - -
Viun7g00553 310 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Viun7g00553 310 Pfam Ring finger domain 186 228 IPR001841 -
Viun7g00553 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 234 IPR013083 -
Viun7g00553 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00553 Viun-Chr7 4294439 4296914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00553 122 261 C3H Transcription Factor Family AT5G01980 39.583 1.04e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00553 K11982 - gmx:100787523 568.926