Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00547 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCCGTCGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGCTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATTCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGCGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCCAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACACCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAACACAGGATTAAATGCTGGTGTAGGTAGTCTCACACTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAACCACTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAACAGCAGCAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGACTAACTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGGACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACGCCATCGACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCCGGTGTATCCAAAGGCTTGATGATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAGAGCAACAGCAAAGTTGTTTGTTGTCATTTCTCTTCAGATGGAAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAAAGTACACCAGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCGGATCCAACCTTTTCTCTACAGGCATATAGTGGTCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGAGTTTTTAAGCAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTGGTGTCTGTCTTTGATGTTGAGACTGATAGGCAGATGAACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGAATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2361 0.4388 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNSITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKQGGSTQVRFQPRVGQLLAAASGSLVSVFDVETDRQMNMFQGHSADVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00547 786 ProSitePatterns Trp-Asp (WD) repeats signature. 523 537 IPR019775 -
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 624 - -
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 539 - -
Viun7g00547 786 Gene3D - 637 786 IPR015943 GO:0005515
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 631 IPR001680 GO:0005515
Viun7g00547 786 SUPERFAMILY WD40 repeat-like 498 786 IPR036322 GO:0005515
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Viun7g00547 786 SMART Lish 8 40 IPR006594 GO:0005515
Viun7g00547 786 Gene3D - 480 636 IPR015943 GO:0005515
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 578 IPR001680 GO:0005515
Viun7g00547 786 CDD WD40 500 786 - -
Viun7g00547 786 PRINTS G protein beta WD-40 repeat signature 773 786 IPR020472 -
Viun7g00547 786 PRINTS G protein beta WD-40 repeat signature 523 537 IPR020472 -
Viun7g00547 786 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 712 IPR001680 GO:0005515
Viun7g00547 786 MobiDBLite consensus disorder prediction 320 407 - -
Viun7g00547 786 MobiDBLite consensus disorder prediction 300 414 - -
Viun7g00547 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 578 - -
Viun7g00547 786 Coils Coil 78 98 - -
Viun7g00547 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun7g00547 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 786 IPR044716 GO:0003714
Viun7g00547 786 Pfam LisH 10 36 IPR006594 GO:0005515
Viun7g00547 786 SMART WD40_4 497 536 IPR001680 GO:0005515
Viun7g00547 786 SMART WD40_4 582 622 IPR001680 GO:0005515
Viun7g00547 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Viun7g00547 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Viun7g00547 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Viun7g00547 786 SMART WD40_4 539 578 IPR001680 GO:0005515
Viun7g00547 786 SMART WD40_4 625 662 IPR001680 GO:0005515
Viun7g00547 786 Pfam WD domain, G-beta repeat 670 703 IPR001680 GO:0005515
Viun7g00547 786 Pfam WD domain, G-beta repeat 754 786 IPR001680 GO:0005515
Viun7g00547 786 Pfam WD domain, G-beta repeat 545 578 IPR001680 GO:0005515
Viun7g00547 786 Pfam WD domain, G-beta repeat 586 622 IPR001680 GO:0005515
Viun7g00547 786 Pfam WD domain, G-beta repeat 509 536 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00547 Viun-Chr7 4187166 4209924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00547 498 748 U-box Gene Family AT2G33340 27.341 7.69e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun7g00547 WD40 0.013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00547 - - var:108326218 1472.99