Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00543 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCCGTCGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGCTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATTCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGCGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCCAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACACCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAACACAGGATTAAATGCTGGTGTAGGTAGTCTCACACTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAACCACTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAACAGCAGCAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGACTAACTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGGACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACGCCATCGACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCCGGTGTATCCAAAGGCTTGATGATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAGAGCAACAGCAAAGTTGTTTGTTGTCATTTCTCTTCAGATGGAAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAAAGTACACCAGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCGGATCCAACCTTTTCTCTACAGGCATATAGTGGTCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGAGTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTGGTGTCTGTCTTTGATGTTGAGACTGATAGGCAGATGAACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGAATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2352 0.4384 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNSITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMYGTDGAGGLASSTNQLDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKGGSTQVRFQPRVGQLLAAASGSLVSVFDVETDRQMNMFQGHSADVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00543 783 Gene3D - 478 635 IPR015943 GO:0005515
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Viun7g00543 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Viun7g00543 783 SMART Lish 8 40 IPR006594 GO:0005515
Viun7g00543 783 Gene3D - 636 783 IPR015943 GO:0005515
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Viun7g00543 783 CDD WD40 498 783 - -
Viun7g00543 783 Pfam WD domain, G-beta repeat 667 700 IPR001680 GO:0005515
Viun7g00543 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Viun7g00543 783 Pfam WD domain, G-beta repeat 543 576 IPR001680 GO:0005515
Viun7g00543 783 Pfam WD domain, G-beta repeat 584 620 IPR001680 GO:0005515
Viun7g00543 783 Pfam WD domain, G-beta repeat 751 783 IPR001680 GO:0005515
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Viun7g00543 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Viun7g00543 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Viun7g00543 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Viun7g00543 783 SUPERFAMILY WD40 repeat-like 496 783 IPR036322 GO:0005515
Viun7g00543 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 783 IPR044716 GO:0003714
Viun7g00543 783 MobiDBLite consensus disorder prediction 320 407 - -
Viun7g00543 783 MobiDBLite consensus disorder prediction 300 414 - -
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 709 IPR001680 GO:0005515
Viun7g00543 783 Coils Coil 78 98 - -
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Viun7g00543 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun7g00543 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Viun7g00543 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Viun7g00543 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Viun7g00543 783 SMART WD40_4 495 534 IPR001680 GO:0005515
Viun7g00543 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Viun7g00543 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Viun7g00543 783 SMART WD40_4 623 659 IPR001680 GO:0005515
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Viun7g00543 783 Pfam LisH 10 36 IPR006594 GO:0005515
Viun7g00543 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00543 Viun-Chr7 4187166 4209924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00543 496 745 U-box Gene Family AT2G33340 27.341 7.06e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun7g00543 WD40 0.013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00543 - - var:108326218 1469.14