Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00542 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCCGTCGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGCTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATTCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGCGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCCAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACACCTGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAACACAGGATTAAATGCTGGTGTAGGTAGTCTCACACTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAACCACTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAACAGCAGCAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGACTAACTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGGACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACGCCATCGACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCCGGTGTATCCAAAGGCTTGATGATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAGAGCAACAGCAAAGTTGTTTGTTGTCATTTCTCTTCAGATGGAAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAAAGTACACCAGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCGGATCCAACCTTTTCTCTACAGGCATATAGTGGTCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGAGTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTGGTGTCTGTCTTTGATGTTGAGACTGATAGGCAGATGAACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGAATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2355 0.4382 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNSITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKGGSTQVRFQPRVGQLLAAASGSLVSVFDVETDRQMNMFQGHSADVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00542 784 Gene3D - 637 784 IPR015943 GO:0005515
Viun7g00542 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 784 IPR044716 GO:0003714
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Viun7g00542 784 SMART Lish 8 40 IPR006594 GO:0005515
Viun7g00542 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 544 IPR001680 GO:0005515
Viun7g00542 784 MobiDBLite consensus disorder prediction 299 413 - -
Viun7g00542 784 MobiDBLite consensus disorder prediction 319 406 - -
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 630 IPR001680 GO:0005515
Viun7g00542 784 Pfam WD domain, G-beta repeat 508 535 IPR001680 GO:0005515
Viun7g00542 784 Pfam WD domain, G-beta repeat 585 621 IPR001680 GO:0005515
Viun7g00542 784 Pfam WD domain, G-beta repeat 752 784 IPR001680 GO:0005515
Viun7g00542 784 Pfam WD domain, G-beta repeat 544 577 IPR001680 GO:0005515
Viun7g00542 784 Pfam WD domain, G-beta repeat 668 701 IPR001680 GO:0005515
Viun7g00542 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Viun7g00542 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Viun7g00542 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Viun7g00542 784 CDD WD40 499 784 - -
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 623 - -
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 503 538 - -
Viun7g00542 784 Coils Coil 78 98 - -
Viun7g00542 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Viun7g00542 784 Gene3D - 479 636 IPR015943 GO:0005515
Viun7g00542 784 Pfam LisH 10 36 IPR006594 GO:0005515
Viun7g00542 784 SMART WD40_4 581 621 IPR001680 GO:0005515
Viun7g00542 784 SMART WD40_4 496 535 IPR001680 GO:0005515
Viun7g00542 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Viun7g00542 784 SMART WD40_4 624 660 IPR001680 GO:0005515
Viun7g00542 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Viun7g00542 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Viun7g00542 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Viun7g00542 784 SUPERFAMILY WD40 repeat-like 497 784 IPR036322 GO:0005515
Viun7g00542 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00542 Viun-Chr7 4187166 4209924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00542 497 746 U-box Gene Family AT2G33340 27.341 6.95e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun7g00542 WD40 0.013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00542 - - var:108326218 1480.69