Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00538 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCCGTCGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAACAACAGCAACTGCAAATGCAGCAGCTGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATTCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGCGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCCAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACACCTGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAACACAGGATTAAATGCTGGTGTAGGTAGTCTCACACTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAACCACTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACAACAGCAGCAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGACTAACTAGGGGAAGTTTGAATGCTAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATGCAGAATAACCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGGACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACGCCATCGACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCCGGTGTATCCAAAGGCTTGATGATGTATGGTACTGATGGAGCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAGAGCAACAGCAAAGTTGTTTGTTGTCATTTCTCTTCAGATGGAAAATTATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAAAGTACACCAGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCGGATCCAACCTTTTCTCTACAGGCATATAGTGGTCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGTTTCTGGAATATTAGCCAATATTCTTGCACCCGAGTTTTTAAGCAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTGGTGTCTGTCTTTGATGTTGAGACTGATAGGCAGATGAACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGAATGGTTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2358 0.4385 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQMQQLQLIRQAQLQRRDSNHPPLGGPVNSITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLTRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLMQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKQGGSTQVRFQPRVGQLLAAASGSLVSVFDVETDRQMNMFQGHSADVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00538 785 PRINTS G protein beta WD-40 repeat signature 772 785 IPR020472 -
Viun7g00538 785 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Viun7g00538 785 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 711 IPR001680 GO:0005515
Viun7g00538 785 CDD WD40 499 785 - -
Viun7g00538 785 SMART Lish 8 40 IPR006594 GO:0005515
Viun7g00538 785 Gene3D - 479 635 IPR015943 GO:0005515
Viun7g00538 785 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 785 IPR044716 GO:0003714
Viun7g00538 785 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 544 IPR001680 GO:0005515
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 753 785 - -
Viun7g00538 785 MobiDBLite consensus disorder prediction 319 406 - -
Viun7g00538 785 MobiDBLite consensus disorder prediction 299 413 - -
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 753 785 IPR001680 GO:0005515
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 630 IPR001680 GO:0005515
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Viun7g00538 785 Pfam WD domain, G-beta repeat 508 535 IPR001680 GO:0005515
Viun7g00538 785 Pfam WD domain, G-beta repeat 753 785 IPR001680 GO:0005515
Viun7g00538 785 Pfam WD domain, G-beta repeat 585 621 IPR001680 GO:0005515
Viun7g00538 785 Pfam WD domain, G-beta repeat 669 702 IPR001680 GO:0005515
Viun7g00538 785 Pfam WD domain, G-beta repeat 544 577 IPR001680 GO:0005515
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 623 - -
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 503 538 - -
Viun7g00538 785 SUPERFAMILY WD40 repeat-like 497 785 IPR036322 GO:0005515
Viun7g00538 785 Coils Coil 78 98 - -
Viun7g00538 785 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun7g00538 785 Pfam LisH 10 36 IPR006594 GO:0005515
Viun7g00538 785 SMART WD40_4 581 621 IPR001680 GO:0005515
Viun7g00538 785 SMART WD40_4 496 535 IPR001680 GO:0005515
Viun7g00538 785 SMART WD40_4 664 702 IPR001680 GO:0005515
Viun7g00538 785 SMART WD40_4 624 661 IPR001680 GO:0005515
Viun7g00538 785 SMART WD40_4 746 785 IPR001680 GO:0005515
Viun7g00538 785 SMART WD40_4 705 744 IPR001680 GO:0005515
Viun7g00538 785 SMART WD40_4 538 577 IPR001680 GO:0005515
Viun7g00538 785 Gene3D - 636 785 IPR015943 GO:0005515
Viun7g00538 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00538 Viun-Chr7 4187166 4209925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00538 497 747 U-box Gene Family AT2G33340 27.341 7.60e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun7g00538 WD40 0.013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00538 - - var:108326218 1476.07