Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00536 ATGGAGAAGAGTATTAAACTAAATCTTCCTCCTATCTCCCTCTTGGATTTGCCTGAATCCACCTTGGATTTCATTCTCAAGTGCCTTTCTCCAATGGACCTTTGCAGAATGTCAAAGGTGTGTGTTTTGTTGAAGGGTAAATGTGAAAGTGATGAGTTTTGGGAAAATCACATAAAAGAGAAATGGGGAAGAGTGATTGGTGATGCTGTTTACAAGGAGTGGGAGTGGCACATAGCAATTGCAAAAGATGGAGTTTTGTTGAACAATCAACACACCAATCAAACTGGCTCAATGGGTTCTTTTTCTGGTGTTTGGCCTAACCTATGTCTTGGTTCATACTTAGAACATTTCAAGCTCCTCAATGGTAAAAACTCAAACAACTTTATGATGTCTTTGTATTTCTCTCTAGAGACTGGTAGCTTTTGGTTTCCTGCTCAGGTCTACAAGGAACTGGTGATTTACAATGCGTTGGTTAAGTATGACTCACAATCTAATACTTTTCAAGCAAGGTATCAAAATAGAGATTGGGGATTTCTCGGGAGGAACATTGAGTGGGATATGGTGAGAGCTCCCGCAGTTGATACTCCTCCATATGTTGTCCATGTCTCTCATTGTTCACACAACTTGAAACCAGAGGATCATGTTGAGATTCAATGGAGACCAGATACACAATCTCCTTATGATTGGTGGTATGCTGTTATTGGTCACTTGGACTCATGTAATCAAAATTGTTGTCGGTGTCATTACAGCGATACGTTGATAGTGGAGTTCAGGCAATACCCTGAAGAATCAGACTCTAGACGAATAAAGTTGTGTAGGAAGAAGAATGAAGAACAAAGTGATCAAATAGAAGGCTACTATGGGGGAATTAGAAAGCTTGAGAATGAGGATGAGATTGAAACATGGAAGAGGCTCTTCCCACTTCAAATTCAGTTTCAGGATGACATGGAAGACTTTGATGATGTTGGCTCCTTAGAGGATAGTGTGGAATCATTTCACTCACATGATGACATGGAACACTTTGGAGATGTTGACTCCTTAGACGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAACGAACCCTTCTGAGCATCATACAGATGCTTCGCAAGGCTTTACCTTCGGTGAAGTTGGTTCTATGCGCAACAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGAAAATTATTGGCTAGTGCCGGAAATGACAAAAAGGTTGTTGTGTGGAACATGGAGACACTGCAAACAGAGAGTACAGCAGAGGAACACAGTCTTACTGTTACTGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCGTCTGATTCAACTGTTCGTTTGTGGGATGCTGCTGATCCATTGTTTTCCTTACAGGTACATATTGGTCATACTTCACATGTGGCGTCCCTTGATTTTCACCCAACGAAAAATGATCTTTTCTGTTCCTGTGATGATATCAATGAGATTCGTTTCTGGAATATTAACCAATATTCTTCCATCCAAGGTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCACCTTCTGGCTGCAGCAAGTGGGAGTTTTGTGTCTCTCTTTGATGTTGAGACTTGTATGCAGATGCATACATTTCAGGGACACTCTGCCGAGGTACATTTCGTGTGTTGGGATCCAAATGGAGATTACTTGGCATCTGTGAGTGAAGAATGTGTGAAAGTGTGGTCAATTGCATCTGGGGAGTGCATTCATGAACTTAATTGCAATGGGGAAGCCTTTCGTTCTTGTGTTTTTCACCCAATCTACTCAACTCTCTTGGTTATTGGAGCATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAAAATAATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGGATGATTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 1998 0.4144 MEKSIKLNLPPISLLDLPESTLDFILKCLSPMDLCRMSKVCVLLKGKCESDEFWENHIKEKWGRVIGDAVYKEWEWHIAIAKDGVLLNNQHTNQTGSMGSFSGVWPNLCLGSYLEHFKLLNGKNSNNFMMSLYFSLETGSFWFPAQVYKELVIYNALVKYDSQSNTFQARYQNRDWGFLGRNIEWDMVRAPAVDTPPYVVHVSHCSHNLKPEDHVEIQWRPDTQSPYDWWYAVIGHLDSCNQNCCRCHYSDTLIVEFRQYPEESDSRRIKLCRKKNEEQSDQIEGYYGGIRKLENEDEIETWKRLFPLQIQFQDDMEDFDDVGSLEDSVESFHSHDDMEHFGDVDSLDDNVESFLSQDDGDGTNPSEHHTDASQGFTFGEVGSMRNSNSKVVCCHFSSDGKLLASAGNDKKVVVWNMETLQTESTAEEHSLTVTDVRFRPNSTQLATSSSDSTVRLWDAADPLFSLQVHIGHTSHVASLDFHPTKNDLFCSCDDINEIRFWNINQYSSIQGFKGGSTQVRFQPRVGHLLAAASGSFVSLFDVETCMQMHTFQGHSAEVHFVCWDPNGDYLASVSEECVKVWSIASGECIHELNCNGEAFRSCVFHPIYSTLLVIGAYQSLELWNMVENKIMTIPAHECVISALAQSPVTGMIASASHDKSVKIWK 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00536 665 Gene3D - 2 88 - -
Viun7g00536 665 Pfam F-box domain 14 54 IPR001810 GO:0005515
Viun7g00536 665 Gene3D - 333 520 IPR015943 GO:0005515
Viun7g00536 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 419 - -
Viun7g00536 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 633 665 - -
Viun7g00536 665 MobiDBLite consensus disorder prediction 351 377 - -
Viun7g00536 665 SUPERFAMILY F-box domain 14 63 IPR036047 GO:0005515
Viun7g00536 665 SMART fbox_2 17 57 IPR001810 GO:0005515
Viun7g00536 665 Gene3D - 521 595 IPR015943 GO:0005515
Viun7g00536 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 591 IPR001680 GO:0005515
Viun7g00536 665 SMART WD40_4 377 416 IPR001680 GO:0005515
Viun7g00536 665 SMART WD40_4 544 582 IPR001680 GO:0005515
Viun7g00536 665 SMART WD40_4 626 665 IPR001680 GO:0005515
Viun7g00536 665 SMART WD40_4 459 502 IPR001680 GO:0005515
Viun7g00536 665 SMART WD40_4 419 458 IPR001680 GO:0005515
Viun7g00536 665 SMART WD40_4 585 624 IPR001680 GO:0005515
Viun7g00536 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 426 458 IPR001680 GO:0005515
Viun7g00536 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 426 458 - -
Viun7g00536 665 PRINTS G protein beta WD-40 repeat signature 652 665 IPR020472 -
Viun7g00536 665 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Viun7g00536 665 PRINTS G protein beta WD-40 repeat signature 445 459 IPR020472 -
Viun7g00536 665 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 282 665 IPR044716 GO:0003714
Viun7g00536 665 ProSitePatterns Trp-Asp (WD) repeats signature. 403 417 IPR019775 -
Viun7g00536 665 ProSiteProfiles F-box domain profile. 11 57 IPR001810 GO:0005515
Viun7g00536 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 425 IPR001680 GO:0005515
Viun7g00536 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 633 665 IPR001680 GO:0005515
Viun7g00536 665 Pfam WD domain, G-beta repeat 428 458 IPR001680 GO:0005515
Viun7g00536 665 Pfam WD domain, G-beta repeat 389 416 IPR001680 GO:0005515
Viun7g00536 665 Pfam WD domain, G-beta repeat 629 665 IPR001680 GO:0005515
Viun7g00536 665 Pfam WD domain, G-beta repeat 548 582 IPR001680 GO:0005515
Viun7g00536 665 SUPERFAMILY WD40 repeat-like 380 665 IPR036322 GO:0005515
Viun7g00536 665 CDD WD40 388 665 - -
Viun7g00536 665 Gene3D - 596 665 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00536 Viun-Chr7 4170178 4176171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00536 402 583 U-box Gene Family AT2G33340 28.571 1.21e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00536 - - vun:114191803 1398.65