Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00535 ATGGAGAAGAGTATTAAACTAAATCTTCCTCCTATCTCCCTCTTGGATTTGCCTGAATCCACCTTGGATTTCATTCTCAAGTGCCTTTCTCCAATGGACCTTTGCAGAATGTCAAAGGTGTGTGTTTTGTTGAAGGGTAAATGTGAAAGTGATGAGTTTTGGGAAAATCACATAAAAGAGAAATGGGGAAGAGTGATTGGTGATGCTGTTTACAAGGAGTGGGAGTGGCACATAGCAATTGCAAAAGATGGAGTTTTGTTGAACAATCAACACACCAATCAAACTGGCTCAATGGGTTCTTTTTCTGGTGTTTGGCCTAACCTATGTCTTGGTTCATACTTAGAACATTTCAAGCTCCTCAATGGTAAAAACTCAAACAACTTTATGATGTCTTTGTATTTCTCTCTAGAGACTGGTAGCTTTTGGTTTCCTGCTCAGGTCTACAAGGAACTGGTGATTTACAATGCGTTGGTTAAGTATGACTCACAATCTAATACTTTTCAAGCAAGGTATCAAAATAGAGATTGGGGATTTCTCGGGAGGAACATTGAGTGGGATATGGTGAGAGCTCCCGCAGTTGATACTCCTCCATATGTTGTCCATGTCTCTCATTGTTCACACAACTTGAAACCAGAGGATCATGTTGAGATTCAATGGAGACCAGATACACAATCTCCTTATGATTGGTGGTATGCTGTTATTGGTCACTTGGACTCATGTAATCAAAATTGTTGTCGGTGTCATTACAGCGATACGTTGATAGTGGAGTTCAGGCAATACCCTGAAGAATCAGACTCTAGACGAATAAAGTTGTGTAGGAAGAAGAATGAAGAACAAAGTGATCAAATAGAAGGCTACTATGGGGGAATTAGAAAGCTTGAGAATGAGGATGAGATTGAAACATGGAAGAGGCTCTTCCCACTTCAAATTCAGGATGACATGGAAGACTTTGATGATGTTGGCTCCTTAGAGGATAGTGTGGAATCATTTCACTCACATGATGACATGGAACACTTTGGAGATGTTGACTCCTTAGACGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAACGAACCCTTCTGAGCATCATACAGATGCTTCGCAAGGCTTTACCTTCGGTGAAGTTGGTTCTATGCGCAACAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGAAAATTATTGGCTAGTGCCGGAAATGACAAAAAGGTTGTTGTGTGGAACATGGAGACACTGCAAACAGAGAGTACAGCAGAGGAACACAGTCTTACTGTTACTGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCGTCTGATTCAACTGTTCGTTTGTGGGATGCTGCTGATCCATTGTTTTCCTTACAGGTACATATTGGTCATACTTCACATGTGGCGTCCCTTGATTTTCACCCAACGAAAAATGATCTTTTCTGTTCCTGTGATGATATCAATGAGATTCGTTTCTGGAATATTAACCAATATTCTTCCATCCAAGGTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCACCTTCTGGCTGCAGCAAGTGGGAGTTTTGTGTCTCTCTTTGATGTTGAGACTTGTATGCAGATGCATACATTTCAGGGACACTCTGCCGAGGTACATTTCGTGTGTTGGGATCCAAATGGAGATTACTTGGCATCTGTGAGTGAAGAATGTGTGAAAGTGTGGTCAATTGCATCTGGGGAGTGCATTCATGAACTTAATTGCAATGGGGAAGCCTTTCGTTCTTGTGTTTTTCACCCAATCTACTCAACTCTCTTGGTTATTGGAGCATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAAAATAATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGGATGATTGCTTCTGCCAGTCATGACAAATCTGTAAAGATTTGGAAATAA 1992 0.4147 MEKSIKLNLPPISLLDLPESTLDFILKCLSPMDLCRMSKVCVLLKGKCESDEFWENHIKEKWGRVIGDAVYKEWEWHIAIAKDGVLLNNQHTNQTGSMGSFSGVWPNLCLGSYLEHFKLLNGKNSNNFMMSLYFSLETGSFWFPAQVYKELVIYNALVKYDSQSNTFQARYQNRDWGFLGRNIEWDMVRAPAVDTPPYVVHVSHCSHNLKPEDHVEIQWRPDTQSPYDWWYAVIGHLDSCNQNCCRCHYSDTLIVEFRQYPEESDSRRIKLCRKKNEEQSDQIEGYYGGIRKLENEDEIETWKRLFPLQIQDDMEDFDDVGSLEDSVESFHSHDDMEHFGDVDSLDDNVESFLSQDDGDGTNPSEHHTDASQGFTFGEVGSMRNSNSKVVCCHFSSDGKLLASAGNDKKVVVWNMETLQTESTAEEHSLTVTDVRFRPNSTQLATSSSDSTVRLWDAADPLFSLQVHIGHTSHVASLDFHPTKNDLFCSCDDINEIRFWNINQYSSIQGFKGGSTQVRFQPRVGHLLAAASGSFVSLFDVETCMQMHTFQGHSAEVHFVCWDPNGDYLASVSEECVKVWSIASGECIHELNCNGEAFRSCVFHPIYSTLLVIGAYQSLELWNMVENKIMTIPAHECVISALAQSPVTGMIASASHDKSVKIWK 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00535 663 Pfam F-box domain 14 54 IPR001810 GO:0005515
Viun7g00535 663 Gene3D - 508 663 IPR015943 GO:0005515
Viun7g00535 663 Gene3D - 341 507 IPR015943 GO:0005515
Viun7g00535 663 Pfam WD domain, G-beta repeat 426 456 IPR001680 GO:0005515
Viun7g00535 663 Pfam WD domain, G-beta repeat 546 580 IPR001680 GO:0005515
Viun7g00535 663 Pfam WD domain, G-beta repeat 627 663 IPR001680 GO:0005515
Viun7g00535 663 Pfam WD domain, G-beta repeat 387 414 IPR001680 GO:0005515
Viun7g00535 663 PRINTS G protein beta WD-40 repeat signature 650 663 IPR020472 -
Viun7g00535 663 PRINTS G protein beta WD-40 repeat signature 401 415 IPR020472 -
Viun7g00535 663 PRINTS G protein beta WD-40 repeat signature 443 457 IPR020472 -
Viun7g00535 663 ProSitePatterns Trp-Asp (WD) repeats signature. 401 415 IPR019775 -
Viun7g00535 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 456 - -
Viun7g00535 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 423 IPR001680 GO:0005515
Viun7g00535 663 SMART fbox_2 17 57 IPR001810 GO:0005515
Viun7g00535 663 CDD WD40 386 663 - -
Viun7g00535 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 663 IPR001680 GO:0005515
Viun7g00535 663 SMART WD40_4 375 414 IPR001680 GO:0005515
Viun7g00535 663 SMART WD40_4 457 500 IPR001680 GO:0005515
Viun7g00535 663 SMART WD40_4 583 622 IPR001680 GO:0005515
Viun7g00535 663 SMART WD40_4 624 663 IPR001680 GO:0005515
Viun7g00535 663 SMART WD40_4 417 456 IPR001680 GO:0005515
Viun7g00535 663 SMART WD40_4 542 580 IPR001680 GO:0005515
Viun7g00535 663 MobiDBLite consensus disorder prediction 349 375 - -
Viun7g00535 663 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 311 663 IPR044716 GO:0003714
Viun7g00535 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 663 - -
Viun7g00535 663 Gene3D - 2 88 - -
Viun7g00535 663 ProSiteProfiles F-box domain profile. 11 57 IPR001810 GO:0005515
Viun7g00535 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 589 IPR001680 GO:0005515
Viun7g00535 663 SUPERFAMILY WD40 repeat-like 378 663 IPR036322 GO:0005515
Viun7g00535 663 SUPERFAMILY F-box domain 14 63 IPR036047 GO:0005515
Viun7g00535 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 417 - -
Viun7g00535 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 456 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00535 Viun-Chr7 4170178 4176171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00535 400 581 U-box Gene Family AT2G33340 28.042 1.23e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00535 - - vun:114191803 1389.4