Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00530 ATGTCAGACGAATTCTTTGTTAGAGGTGATGAGAGTAGAAAACTCAAGCGTAAGATCGATGAAGCATCTTCTTCTGAAATTGTAGATTCAGAGTTATTACTATCTATGAGTCTTGGCAACAACAAAATGGTTGGTGAGCCTTCATCCATGTCCATTTACAAATCATTGAAAAACTCAATGGATTCACCAAATTCATCACCAAAACCAGTAGAAAACCCTAATCATCAATTGATTGTGCCTAAGCAACGACAATTCTCGTGCAAGTTTTGCAACAAAAAGTTTCCAAGCTCCCAAGCCCTAGGAGGGCATCAAAATGCTCATAGACGCGAAAGAGTTCTCTCAAGAATAGATAGAGAGATTGATATGGGAACTTTTGGACTTGGTGTTCATATGTACCCTTATTCAACCATGGCTCATCAACACCCTTTTCGTGGTCCAATACCCTTTTATTATGAGCCTAACATGCACCCTATGACTCAAATGTCAACCATGCCATGGCCACTTGTACCTAGCTATGGAAATCAAGGGTTACACAACACCTCCACTTCAGGGCAACGATTTGGGATGACAAACCTTGGAGGCATAAGTGTTGAAACTCCACAAAGTGTATATCAAAGAGGATTAGGGTTTGGTTTTGAACATAACCAAGTTCATTCATTTAATCCAACCAATGGAGCCACCATGGCTCGTCCAAGTCTTGGTAGCCTTATGAGAAATCAGTATAATATTGGGAACCAACCATTTTAA 747 0.4003 MSDEFFVRGDESRKLKRKIDEASSSEIVDSELLLSMSLGNNKMVGEPSSMSIYKSLKNSMDSPNSSPKPVENPNHQLIVPKQRQFSCKFCNKKFPSSQALGGHQNAHRRERVLSRIDREIDMGTFGLGVHMYPYSTMAHQHPFRGPIPFYYEPNMHPMTQMSTMPWPLVPSYGNQGLHNTSTSGQRFGMTNLGGISVETPQSVYQRGLGFGFEHNQVHSFNPTNGATMARPSLGSLMRNQYNIGNQPF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00530 248 Gene3D Classic Zinc Finger 71 121 - -
Viun7g00530 248 Pfam C2H2-type zinc finger 85 110 - -
Viun7g00530 248 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Viun7g00530 248 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Viun7g00530 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Viun7g00530 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 196 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00530 Viun-Chr7 4122499 4123245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00530 46 176 C2H2 Transcription Factor Family AT1G24625 33.588 8.85e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g00530 zf-C2H2_6 2.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00530 - - gmx:102663144 302.753