Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00485 ATGTCCCTCGAAGACTCTCTAAGATCTCTCTCTCTCGACTACCTCAACCTTCTCATCAATGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGTCGTCTCGTTCACGCCCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGCAAATTCTTCTGCGGCCCCGACCCTCCACCGGGTCTCGACCCCGCCGCCGCTTCGCGAGCCGGCGCCGCCTCCGCAGCGCGTCCCCCCGGCGTGATCCCGGTGAACTCCGTCGGCTACGAGGTTTTCTTGCTGCTGCTGCAGTTCCTGTACAGTGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGACCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTCGCCGCGGCCAGATACTTCGGCGTTGAACAACTTGCATTGCTCACTCAGAAACAACTTGCGAGCATGGTGGAGAAAGCTTCGATCGACGATGTGATGAAAGTGTTGATAGCATCTCGAAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGCTCCCACCTGGTGGCAAAGTCAGGTCTTCCGCCGGAGGTGCTGGCCAAGCACCTCCCAATCGACGTGGTGGCCAAGATCGAGGAGCTCCGCCTCAAATCCTCCCTCGCGCGCCGCTCCATGCTGCCGCTGCGCCACCCGCACCAGCACCCCGACCTGGGCGCCGCCGACATGGAGGACCAGAAAATCCGGCGGATGCGGCGCGCGCTGGACTCCTCCGACGTGGAACTCGTGAAGCTCATGGTGATGGGGGAGGGCCTGAACCTGGACGAGGCGCTGGCGTTGCACTACGCCGTGGAGAGTTGCAGCAGGGAGGTGGTGAAGGCGCTGCTGGAGCTGGGCGCGGCGGACGTTAATTTCCCGGCGGGGCCGGCCGGGAAGACTCCTCTGCACGTGGCGGCGGAGATGGTATCCCCAGAGATGGTGGCGGTGTTGCTGGACCACCACGCTGACCCGAACGTGCGAACCGTGGACGGCGTGACCCCGTTGGACATCCTGAGAACCCTAACCTCGGACTTCCTCTTCAAAGGGGCAGTCCCTGGACTCACCCACATTGAACCCAACAAGCTGAGGCTGTGCTTGGAGCTGGTGCAATCTGCAGCTCTCGTTTTGTCTCGTGAAGAAGGAAACAACAACAACAACAACGTTAACAACAGCAACAACGACAACACTAACAACCCGAACACTTCTGCTTCTGCAACTTCTATCTATCCACCAATGAGTGAAGCGCACAGCAGCAGCAGCAATTTGGACTCGAGACTGGTGTATCTGAACCTCGGCGCCACGCCACAAATAGGTGACGATGATAGCAGCAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGTGGATGTGACCCATCAATGCTTTTCAAATGGTAG 1452 0.6006 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPPGLDPAAASRAGAASAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSMLPLRHPHQHPDLGAADMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNNNNNVNNSNNDNTNNPNTSASATSIYPPMSEAHSSSSNLDSRLVYLNLGATPQIGDDDSSSQREAMNRHGSQGGGCDPSMLFKW 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00485 483 MobiDBLite consensus disorder prediction 396 435 - -
Viun7g00485 483 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Viun7g00485 483 FunFam regulatory protein NPR5 isoform X2 244 361 - -
Viun7g00485 483 SMART BTB_4 25 162 IPR000210 GO:0005515
Viun7g00485 483 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Viun7g00485 483 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Viun7g00485 483 SMART ANK_2a 278 308 IPR002110 GO:0005515
Viun7g00485 483 SMART ANK_2a 313 342 IPR002110 GO:0005515
Viun7g00485 483 Gene3D - 245 361 IPR036770 -
Viun7g00485 483 MobiDBLite consensus disorder prediction 449 483 - -
Viun7g00485 483 SUPERFAMILY POZ domain 8 160 IPR011333 -
Viun7g00485 483 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Viun7g00485 483 Pfam Domain of unknown function (DUF3420) 197 255 IPR024228 -
Viun7g00485 483 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 478 IPR044284 GO:0099402
Viun7g00485 483 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Viun7g00485 483 CDD BTB_POZ_NPR_plant 8 162 - -
Viun7g00485 483 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Viun7g00485 483 MobiDBLite consensus disorder prediction 452 467 - -
Viun7g00485 483 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Viun7g00485 483 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00485 Viun-Chr7 3692490 3697176 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun7g00485 BTB 5.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00485 K14508 - gmx:100811388 754.592