Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00437 ATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAACGGGTTGCTCAAGAAGGCCAGAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAGCGTACCCTATCAAGGTATAGGAAAGGCTCAGAATTGGATTCTGCAGAGCAACCTATTGATGTGCCCCCAAAAGATGTTACGGTTATGGAGCCTGATACAAACCTTTTGAAGGATGAAATAACAAAGCTTCGATCTGCATACTCAAATATGAAGGGTAAGGAGCTTGATGGATTGAGCCTCAAAGAACTGCAGCACCTAGAAAAGCAACTGAGTGAAGGGATATTAGCTGTCAAAGACAAGAAGGAACAAGTACTTGTAGAACAGCTTACAAGGTCCAGGATACAGGAGCAAAAAGCTGTGCTGGAGAATGAAGTTCTGCGCAAACAGCTTGAGGAGATACAAAATAAAGCAAATACACAGTTCCTTGAATTCAGTTGTTTGGATAGGACATTTTCCAAGAACAGTTCAAAATCTCTTTTCAATTGTGCTTCAGAGGAAAATAACCATTCAGATACTTCTTTGCAGTTAGGGTTGTCACCACCAGATTATGGTCGTCAGAGTAAAGGATGGAAAATAGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACAGTGA 747 0.4177 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSNTSMERTLSRYRKGSELDSAEQPIDVPPKDVTVMEPDTNLLKDEITKLRSAYSNMKGKELDGLSLKELQHLEKQLSEGILAVKDKKEQVLVEQLTRSRIQEQKAVLENEVLRKQLEEIQNKANTQFLEFSCLDRTFSKNSSKSLFNCASEENNHSDTSLQLGLSPPDYGRQSKGWKIEPCNDSGSQVASQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00437 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Viun7g00437 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun7g00437 248 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Viun7g00437 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Viun7g00437 248 MobiDBLite consensus disorder prediction 71 91 - -
Viun7g00437 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun7g00437 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun7g00437 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun7g00437 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun7g00437 248 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Viun7g00437 248 Coils Coil 154 186 - -
Viun7g00437 248 Pfam K-box region 93 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun7g00437 248 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun7g00437 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun7g00437 248 MobiDBLite consensus disorder prediction 210 248 - -
Viun7g00437 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Viun7g00437 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00437 Viun-Chr7 3252521 3256534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00437 1 241 MADS-box Gene Family AT5G13790 46.531 1.43e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun7g00437 K-box 5.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00437 - - gmx:100792278 402.519