Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00434 ATGGACGAAGAAAGTAAGAAAGGGTTGTTGGAGAGTGTGAGAAAATTCTCAACACCACCGTTTTTGTTGAAGACATACATGTTGGTTGAGGATCCTGCCACCAATGATGTTGTGTCGTGGAATGATGATGGAACAACGTTTGTGGTGTTGCAACCTGCAGAGTTCGCTCGTGATCTTCTTCCAACTCTCTTCAACCATTGCAACTTCTCTAGCTTTGTTCGCCAGCTCAATACTTACGGTTTTCGTAAGGTTACTACAAGCAGATGGGAATTTTGCAACGAGCGATTCAGAAAGGGTGAGAAAGAACTGCTATGCGAGATTAGACGTAAAAAATCATGGGTGAGGAAGAGACAACATAACTCACATGAAGATGAGAGGTCATTTTCTTCAAATTATGCAGTTCTGATGGATGAAAACAAGCGATTGAAGAAGGAGAATGTGGTGTTGCACTCAGAGCTCACAACCATGAAGAGAAAGTGCAAGGACTTGTTCGATTTGGTCACCAAATATTCGTGTGCAAAGGATCAGAAAACAATGTTGTGTCAGGTTCAAGAAGAAAGAGAGATTAAAAAGAAGAACAAAATAGCTGATATCAGCGAAAACACAAACATTTTTCTATCTCCTATGATTATTTAG 636 0.4025 MDEESKKGLLESVRKFSTPPFLLKTYMLVEDPATNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFVRQLNTYGFRKVTTSRWEFCNERFRKGEKELLCEIRRKKSWVRKRQHNSHEDERSFSSNYAVLMDENKRLKKENVVLHSELTTMKRKCKDLFDLVTKYSCAKDQKTMLCQVQEEREIKKKNKIADISENTNIFLSPMII 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00434 211 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 190 IPR027725 -
Viun7g00434 211 Gene3D - 13 112 IPR036388 -
Viun7g00434 211 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g00434 211 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g00434 211 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Viun7g00434 211 FunFam Heat stress transcription factor B-4 13 111 - -
Viun7g00434 211 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g00434 211 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun7g00434 211 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00434 Viun-Chr7 3206787 3210134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00434 19 170 HSF AT2G41690 56.425 1.76e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun7g00434 HSF_DNA-bind 1.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00434 K09419 - pop:7468987 259.225