Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00418 ATGGGGAACAGTTGCGTCACTCCGGTGAGGCTAAGAAGGGAGAGGAGGCAGCGGAAGAAGGAGGAGGCGGCGGCCAAGAAGCTCGTCGTGCTCAAGGAACCCACGGGCCGGGACATTGGGCTGCGCTATGAATTGGGCAAGGAGCTGGGCCGAGGGGAGTTCGGCGTCACCTACCTCTGCCGCGACAAGGAGACCAAGGAGGAGTGGGCGTGCAAATCGATATCCAAGAAGAAACTGCGAACCGCCATTGATATCGAGGATGTGCGCAGAGAGGTGGAGATCATGCGCCACTTGCCCAAACACCCCAACATCGTCTCGCTCAAGGACACATTCGAGGACGACAATGCGGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGCATTGTCGCGCGCGGCCACTACACCGAGCGCGCCGCCGCATCCGTCGTCAAAACCATCGTCGAAGTCGTCCAGATGTGCCACAGACATGGTGTGATGCATAGAGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAGTCAGCACCTCTGAAAGCAATTGACTTTGGATTGTCGGTTATCTTCACACCAGGTGAAAAGTTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAAGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATTTGGAGTGCTGGAGTAATTCTTTACATCTTACTTTGTGGTGTTCCACCTTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAATCAATTATTCGGTCTGTCGTTGATTTTAGGAGGGAACCATGGCCCAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAGAATGAAAAGAAAGCTCCTAATGTTTCATTGGGAGAAACTGTTAGATCAAAGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAACATTTGTCATCAGAAGAAGCTGCTGGAATAAAAGAGGGATTCGACCTGATGGATACAGGCAATAAAGGCAAAATTAACATTGATGAGCTGCGAGAAGGGTTGCAGAAACTAGGTCACCAAATTCCTGACGCAGATGTACAAATACTTATGGAAGTTGGTGATTCAGACAAAGATGGGTATCTAGATTATGCAGAGTTTCTTGCCATATCTATTCATCTGAGAAAGATAGACCATGATGAGCACATTCACAAAGCCTTCCAATTTTTTGATAAGAATAAAAGTGGATATATTGAAATTGAAGAGTTACACAATACCTTAGCTGATGAGGTTGAAACAAACATCGACGAAGTCATCAATGCAATTATGCATGATGTTGACACAGATAAGGATGGAAGAATAAGCTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTTTCTACCTTAAGTCAGAAGTTGTTCAAGAAGGACGGGTCTTTGCAGTTAAACAATGGCGGTAGCTGA 1563 0.4619 MGNSCVTPVRLRRERRQRKKEEAAAKKLVVLKEPTGRDIGLRYELGKELGRGEFGVTYLCRDKETKEEWACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVSLKDTFEDDNAVHLVMELCEGGELFDRIVARGHYTERAAASVVKTIVEVVQMCHRHGVMHRDLKPENFLFGNKKESAPLKAIDFGLSVIFTPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQSIIRSVVDFRREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNEKKAPNVSLGETVRSKLMQFSVMNKLKKRALRVIAEHLSSEEAAGIKEGFDLMDTGNKGKINIDELREGLQKLGHQIPDADVQILMEVGDSDKDGYLDYAEFLAISIHLRKIDHDEHIHKAFQFFDKNKSGYIEIEELHNTLADEVETNIDEVINAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFSTLSQKLFKKDGSLQLNNGGS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00418 520 Gene3D Phosphorylase Kinase; domain 1 45 128 - -
Viun7g00418 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Viun7g00418 520 CDD STKc_CAMK 42 300 - -
Viun7g00418 520 ProSiteProfiles Protein kinase domain profile. 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00418 520 FunFam Calcium-dependent protein kinase 1 45 128 - -
Viun7g00418 520 FunFam Calcium-dependent protein kinase 7 310 485 - -
Viun7g00418 520 Gene3D - 311 484 - -
Viun7g00418 520 Pfam Protein kinase domain 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00418 520 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Viun7g00418 520 SMART efh_1 384 412 IPR002048 GO:0005509
Viun7g00418 520 SMART efh_1 456 484 IPR002048 GO:0005509
Viun7g00418 520 SMART efh_1 420 448 IPR002048 GO:0005509
Viun7g00418 520 SMART efh_1 348 376 IPR002048 GO:0005509
Viun7g00418 520 SMART serkin_6 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00418 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 477 - -
Viun7g00418 520 SUPERFAMILY EF-hand 325 494 IPR011992 -
Viun7g00418 520 Gene3D Transferase(Phosphotransferase) domain 1 129 310 - -
Viun7g00418 520 SUPERFAMILY Protein kinase-like (PK-like) 42 314 IPR011009 -
Viun7g00418 520 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Viun7g00418 520 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Viun7g00418 520 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Viun7g00418 520 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Viun7g00418 520 FunFam calcium-dependent protein kinase 13 129 309 - -
Viun7g00418 520 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Viun7g00418 520 Pfam EF-hand domain pair 419 482 IPR002048 GO:0005509
Viun7g00418 520 Pfam EF-hand domain pair 349 408 IPR002048 GO:0005509
Viun7g00418 520 CDD EFh 420 482 IPR002048 GO:0005509
Viun7g00418 520 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Viun7g00418 520 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00418 Viun-Chr7 3045414 3050061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00418 1 515 EF-hand Containing Proteins AT5G19450 73.208 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun7g00418 Pkinase 2e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00418 K13412 - gmx:100778471 902.123