Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00396 ATGGACGGTGGCGATGACCCTTCAGCATTGGCATGGCTTTGGGTCATTGAAGCCCTATCAGCCTGTAAAGAAATCCCGGATAGCACTTTGCTGGGTTTGATTGATGCAGCACCTGTGGCGAAGGATAAATTTGGTGAAAATACAAAGGAAATGGTTTCTTTGAGGTGCTTGGAGAAACTGTCCACTAGTATGGTTGACCGTGTAGCTTCTTCTACATCGGATTCCAGAGCTGGATTTGATTTTTCGCGGAGTTGTCAAGATGTCCTCCAGGAAATATTGGATGAGATCCCATTATCAAATCTGAAAATGACTGGAGCGCAGCTTTTGAAATCAGATGTTTACCCGTTTATAAATCACAAAAGAGCTGGCACTTCTAAATGTCACTTAGAGCAGCTGAGACAAACAATCTTGGAAGGTACTCATCCTCATACCGATTACTTGAAAGAAAGGAGTGGATTATTTCCGCAGAATAACAGTTACTCAGTGATTGTAAATGATGTCAAACGTGGTGATCATTCAGCTAAGGAAGCTGGGAACTCTGCCAATACAGAAAACATGCTAGGAAAAGATAACTCAGTGTCCTTGACTTTAGAGAATGGGAATAGATCTTCGAGAGAACACTTGCGTGATGATAATCCTTCACCCTCTAAGAGGAGTAGGGTTTACTCAGTTGATGATTATCTTAAAAAACACTTTTATGCAAAGCAAGTCTGTCAGAAGGAATGTGATGATTTCTTTAGAACTTCAAAGAGGGTTAAATTTTCTGCATCTACAAGTTTTGAGCCTAAGAAAGAGAAGCTAGATTCTCAACAAAGACAGGAAGTGTCGGAACATTTAACTGAAAGAATTCTTCTAGTTTCTGAACAGGGAGATCATCCTGTAGAAAATAATAACGAGGAAACTGTGGGTTGTGGGTCCTTAGAGGATATTCTCAATAGATGCATTGTTTCAAAATTGTGCCAACCCAGCAGCCATATTGAAGTTCCCCCTGATGAATCAAATATTCCTTTTAATGATGCTTTGATGCATCAACATATATTTGATGGTGAAAATTCTCAGCATCTGCTGGTTAAGTCAATTCCACATGAAGCACTTGCAGATGGAATCCAACATGAGATTTCAGAAGGTAAACCCACGTCTAAACATGAAAAAGATTTACAACTTGAAGATCCAAATGACTCACCGCATCAAATTGCTGGTGTTAAAGCACTAGATCATAGTGGGAATGGTTGTGGAGTAGAGAAATCAGGTGATATTGGGTATCAAGGTGAAAAAACTAGCCTTGAAATGAAGAAGCAGACAGTACAAAATCGTTGTTTGAAGTGTAATGAAGGTGACCAATTACCAATTCGTGATGTAAATATCGTCCAACCAGTGGTTACTGAATGTTGTCTCGGTATGACAACTACCATGCCAACAAATGATGCTAATGCAGAAAAAAATCAGCAAACAATTAATCTACACCAACCCAAACAGACGGAACCAGATATCGCAACGTTAAATCTCTTCCAAGAGCCAGTTGCTTGTGATGAAACTATAGTTGGTGTGGTTAATGGTTGTGGAGCAGAGTTATCAAGTGATAGTGATGGATATCACAACGAAAAAGAATGTCTTGAAGCAAAAAAGCATGAATTCCTGCACTCCCACTGCATGGTTGATCAAGATTTCTCAGCAATGAATGAACCAAATGAAAAAAATCTTTGCATGAAGTGTAATAATCAAGGTGGCCAATTATTGATTTGTAAAACAACTACTTGCCCAATCATGGTGCATGAAAACTGTCTAGGTGCCTCTGCACAATTCGATGCAAATGGCGACTTTTTTTGCCCATTTTGTGCATATTCTCGCACTATTTCAGAATATATTGAAGCTAAGAAAGAAGCTTCCTTGGCAAGGAAGGAATTGGCCATCTTTATTAGTAAAGGTAAAATGAGTCAAGCTGCCGAGAGTCTTCTTTATGAATTTCGTACACAAGAACATTGTTTTTCAAGAAAGAGTAGTGAGTATGAACATATTCATGTCAAAAACAACAAAGATGAACAGTTAACAAGGTGTGGAGACAATAGAGAAGATCATGTTGGTGAGCATGCAAATGAAACCAATAATCTTCAGTTTGGAAGAAGTCAGCAACAAGCGCCTATATCATGTACCCATTCATCATTCAGAGAAAAGGAAAATATAAGCAATAGATCAGTTGAATTTTTAAGAGAAGAGAAAATAGGTCAAATGCCAAATGCAAAGAACATAACTGGTGTAAGAGGTGAAGAAAATGAAGTGCCAACTGACTGTGTAGATGGACTTGTTGGTGACACATGTACTAGTGAAAAAACAAATATTGCCCTTGTTAATAAAAGCAACTCTAGATATGAAAGTTCACAAGAAACAACAAAACAGCTAGATATTGATGGAGCAACTGAACCAGTTTGTGCACATAATACTGGAAAAGAGGAAATGTCTGAAAATGATTGTGAAAAGGATAGTATTTCTGGATACACCTTGAGACACCGTAAACACAAAATGCAATGCAAACCTGAGGCACACCCTGCATTTCTGGCTAATCAATTAAGACGAAAAAAAATTCCGTGGACAGAAGAGGAGGAAGAGATGTTAAGGGAAGGAGTACAGAAGTTTGGTTTGGATGACCCAAAGAAATGGAAAAACATTTTGGCATTTGGTTCTCATGTGTTTGAGAAAGTTGGTAAGCGTCGTACACCACAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTTCCCCAAAATAA 2766 0.3858 MDGGDDPSALAWLWVIEALSACKEIPDSTLLGLIDAAPVAKDKFGENTKEMVSLRCLEKLSTSMVDRVASSTSDSRAGFDFSRSCQDVLQEILDEIPLSNLKMTGAQLLKSDVYPFINHKRAGTSKCHLEQLRQTILEGTHPHTDYLKERSGLFPQNNSYSVIVNDVKRGDHSAKEAGNSANTENMLGKDNSVSLTLENGNRSSREHLRDDNPSPSKRSRVYSVDDYLKKHFYAKQVCQKECDDFFRTSKRVKFSASTSFEPKKEKLDSQQRQEVSEHLTERILLVSEQGDHPVENNNEETVGCGSLEDILNRCIVSKLCQPSSHIEVPPDESNIPFNDALMHQHIFDGENSQHLLVKSIPHEALADGIQHEISEGKPTSKHEKDLQLEDPNDSPHQIAGVKALDHSGNGCGVEKSGDIGYQGEKTSLEMKKQTVQNRCLKCNEGDQLPIRDVNIVQPVVTECCLGMTTTMPTNDANAEKNQQTINLHQPKQTEPDIATLNLFQEPVACDETIVGVVNGCGAELSSDSDGYHNEKECLEAKKHEFLHSHCMVDQDFSAMNEPNEKNLCMKCNNQGGQLLICKTTTCPIMVHENCLGASAQFDANGDFFCPFCAYSRTISEYIEAKKEASLARKELAIFISKGKMSQAAESLLYEFRTQEHCFSRKSSEYEHIHVKNNKDEQLTRCGDNREDHVGEHANETNNLQFGRSQQQAPISCTHSSFREKENISNRSVEFLREEKIGQMPNAKNITGVRGEENEVPTDCVDGLVGDTCTSEKTNIALVNKSNSRYESSQETTKQLDIDGATEPVCAHNTGKEEMSENDCEKDSISGYTLRHRKHKMQCKPEAHPAFLANQLRRKKIPWTEEEEEMLREGVQKFGLDDPKKWKNILAFGSHVFEKVGKRRTPQDLKDKWKNMCKASPK 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00396 921 MobiDBLite consensus disorder prediction 176 201 - -
Viun7g00396 921 MobiDBLite consensus disorder prediction 202 221 - -
Viun7g00396 921 MobiDBLite consensus disorder prediction 375 391 - -
Viun7g00396 921 MobiDBLite consensus disorder prediction 803 823 - -
Viun7g00396 921 MobiDBLite consensus disorder prediction 375 396 - -
Viun7g00396 921 SMART PHD_3 567 613 IPR001965 -
Viun7g00396 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 651 IPR013083 -
Viun7g00396 921 SUPERFAMILY FYVE/PHD zinc finger 561 616 IPR011011 -
Viun7g00396 921 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 856 920 IPR017930 -
Viun7g00396 921 ProSitePatterns Zinc finger PHD-type signature. 568 612 IPR019786 -
Viun7g00396 921 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 473 918 - -
Viun7g00396 921 CDD SANT_TRF 860 917 - -
Viun7g00396 921 ProSiteProfiles Zinc finger PHD-type profile. 565 615 IPR019787 -
Viun7g00396 921 MobiDBLite consensus disorder prediction 171 221 - -
Viun7g00396 921 SUPERFAMILY Homeodomain-like 856 917 IPR009057 -
Viun7g00396 921 Gene3D - 852 919 - -
Viun7g00396 921 Pfam Myb-like DNA-binding domain 862 920 - -
Viun7g00396 921 SMART sant 858 918 IPR001005 -
Viun7g00396 921 ProSiteProfiles Myb-like domain profile. 854 916 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00396 Viun-Chr7 2848227 2855220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00396 858 918 Single Myb Histone (SMH) Gene Family AT1G17520 47.541 7.67e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun7g00396 Myb_DNA-bind_6 2.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00396 - - var:108326175 1387.09