Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00394 ATGGAGGGTTGCAAAAACTCCCCTCTGAAACCATGGAAGAAAGGCCCCACAAGAGGCAAAGGTGGCCCCCAAAATGCTTCCTGTGAGTACAGAGGTGTGAGACAAAGAACATGGGGCAAATGGGTGGCTGAGATCAGAGAGCCTAAGAAAAGATCAAGACTCTGGCTTGGCTCCTTTGCCACAGCAGAAGAAGCTGCAATGGCCTATGATCAAGCTGCAAGGAGACTCTATGGCCCTGATGCTTACCTCAACCTCCCCCACATGCAACCAAACATCATCAACTCCACCAAATCTCAAAAATTCAAGTGGTTCCCTTCCAACAACTTCATCTCCATGTTCCCCTCACGTGGACTTCTCAACCTCAATGCTCAACCGAGTCTCCATGTCATCCACCAGAAGCTGCAGCAGTTTAAGCACAATGGGGTGCCTGCACCAACTCAACCACCACATTCAAAGGTGGTGGAACTTGAGAACTTGGTCAGCCAAAACCATTCAGAGATTCTCCCTTCACTTCCCCAAGATTCTCAAGCTTCACCGCAAAAAGTAAATGGTGATTTTGAGGAGAAACGTGAGATAGACCTGCTTGAGTTTCTTCAACAGATGGGAATACTAAAAGATGAGAAAACTGATAGCTCGGGAAGTTCAACAGTGTCAGAAGCTGCATCAAGAGATGAGAATGAACAACCAGGAGTGTTTTCTGACATGAGTAGTGTTAACTGGGAGGAACTGATTGAGATGCATGACCATGAAGTTGTGTGTAACTATCTTGCATCAGAAGAAATTCAGTTTGAAGCATATGACACAAACGAGGATCTTACTTTCTCCTCTTCCATTTGGAACTACTAA 846 0.4574 MEGCKNSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRSRLWLGSFATAEEAAMAYDQAARRLYGPDAYLNLPHMQPNIINSTKSQKFKWFPSNNFISMFPSRGLLNLNAQPSLHVIHQKLQQFKHNGVPAPTQPPHSKVVELENLVSQNHSEILPSLPQDSQASPQKVNGDFEEKREIDLLEFLQQMGILKDEKTDSSGSSTVSEAASRDENEQPGVFSDMSSVNWEELIEMHDHEVVCNYLASEEIQFEAYDTNEDLTFSSSIWNY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00394 281 MobiDBLite consensus disorder prediction 206 232 - -
Viun7g00394 281 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Viun7g00394 281 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Viun7g00394 281 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Viun7g00394 281 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 243 - -
Viun7g00394 281 MobiDBLite consensus disorder prediction 1 27 - -
Viun7g00394 281 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Viun7g00394 281 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Viun7g00394 281 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Viun7g00394 281 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Viun7g00394 281 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Viun7g00394 281 FunFam Ethylene-responsive transcription factor 2 28 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00394 Viun-Chr7 2845395 2846684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00394 5 281 AP2-EREBP Transcription Factor Family AT3G57600 51.228 2.54e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun7g00394 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00394 - - gmx:100808363 402.134