Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00390 ATGGCAGACCCTTACTCCAACTTCTTTTCACCACCTTTCTTCCACTACCCTTCTCCAAACCCTTCCCCCCACCACCACCACCATCCATATGCTCACAACGCCATCAACCAAACCACCACCACCACCGCCACCGCCACCAACACCACCTTTTTCCACTTCCAACACCACCACCACCACCACCACTTTCAAACCACCACCACTTGTTCTTCTTCTTCTTCACCCCCTTCCCCTCCCTTGAGAGAGGCCCTTCCTCTTCTCAGTCTCAGCCCAAAGAATGATGAGGAACAGGAGGAGGAGGAGTACCAGGATCAGGATCAGGATCAGCTTTGCACTGCCATGGATGTGGAAGACAACTTTAACAGGACCCTCCATAACCCCAAAGAAGAGGACCAAGAAGAGGATGCTGATGACAGTGTCACTGTTGCACTGCACATAGGGTTGCCATGCCCTAGTGCTGCTGAGATAGCTTCTGTGCTCTCTTCAGCTTGTGCCTCAGACAAAGACCAACAACAAGGAGGAGGAGGAGATTGTGATAATAATGGGATTCATGATGATTCTTCTTCAGGGTTCTTGTCCAACAGACTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCCGGAACAACATTGATCACCCAAGAGCAAAGCCCCTTAAAGATTTCAGAACTCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGTGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA 1122 0.4813 MADPYSNFFSPPFFHYPSPNPSPHHHHHPYAHNAINQTTTTTATATNTTFFHFQHHHHHHHFQTTTTCSSSSSPPSPPLREALPLLSLSPKNDEEQEEEEYQDQDQDQLCTAMDVEDNFNRTLHNPKEEDQEEDADDSVTVALHIGLPCPSAAEIASVLSSACASDKDQQQGGGGDCDNNGIHDDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00390 373 SUPERFAMILY beta-beta-alpha zinc fingers 281 319 IPR036236 -
Viun7g00390 373 Gene3D Classic Zinc Finger 277 353 - -
Viun7g00390 373 PANTHER ZINC FINGER PROTEIN WIP2 44 371 IPR043584 GO:0003700|GO:0010468
Viun7g00390 373 FunFam Zinc finger protein WIP2 268 350 - -
Viun7g00390 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 319 IPR013087 -
Viun7g00390 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Viun7g00390 373 MobiDBLite consensus disorder prediction 62 83 - -
Viun7g00390 373 Gene3D Classic Zinc Finger 214 237 - -
Viun7g00390 373 SMART c2h2final6 299 319 IPR013087 -
Viun7g00390 373 SMART c2h2final6 215 237 IPR013087 -
Viun7g00390 373 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00390 Viun-Chr7 2776356 2778762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00390 1 373 C2H2 Transcription Factor Family AT3G57670 60.000 2.74e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g00390 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00390 - - gmx:100783088 520.39