Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00374 ATGGAGCAAACCATGCTTGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCATCATAGCTCCGGCGCCGGAAACTGCCAGTTCCTTTACTGCGCTGCTCGAACTCCCGCCGACGCAGGCTGTCGAGCTCCTCCACTCGCCGGAGCAAGCTGGGAAACCACCGCGCCATAATCCGAAACCCTGTCCGTTGACCTCATTTGCCTCCGCCTCCGCTTCTGCCGCCAACCTGACCTTCCCATCAAACGCCGCACTGATCGAACGCGCGGCCAGGCTCTCTGTCTTCGCCGGAGAGAATTCTAACTCCAACTCCAACTCCAACTCGACGGAGATTAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGTTCAACTCAGGGCGGCGGCTCAGCCTCCGATCCCGTCCTGGAGAACAAGGACGAGAAGGGACTGAAGAGGAAGGAGCGAGAGAAGAAGGTGAAGGCATCTTCGAAGAAGAGCAAGAGTGTTGTCGCCGATGATAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAAATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGTACAGCATTGGTTCTGGATAAAATCATCAACCATGTACAATCTCTACAACATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTGAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTGTCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCACCCGTCGTGTGGCCAGAAATCCCGCAGAATGCAAATAGACAACAATATCAGCAACCGTGGCAGTTCGATGCATTCCACCACCAGCCCGTTTGGGGCAGGGAAGAAGACAACACTAATTTTATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1041 0.5178 MEQTMLEAIQFNEEIQGIIAPAPETASSFTALLELPPTQAVELLHSPEQAGKPPRHNPKPCPLTSFASASASAANLTFPSNAALIERAARLSVFAGENSNSNSNSNSTEIKRELPETDSNPSSTQGGGSASDPVLENKDEKGLKRKEREKKVKASSKKSKSVVADDSSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSPMDCNFPPTVAPVVWPEIPQNANRQQYQQPWQFDAFHHQPVWGREEDNTNFMTPENSLLSYDSSANSVSLHSNQLKMEL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00374 346 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Viun7g00374 346 Gene3D - 182 253 IPR036638 GO:0046983
Viun7g00374 346 MobiDBLite consensus disorder prediction 134 170 - -
Viun7g00374 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 254 IPR036638 GO:0046983
Viun7g00374 346 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 79 330 IPR024097 GO:0006355
Viun7g00374 346 SMART finulus 191 241 IPR011598 GO:0046983
Viun7g00374 346 MobiDBLite consensus disorder prediction 117 131 - -
Viun7g00374 346 MobiDBLite consensus disorder prediction 96 170 - -
Viun7g00374 346 FunFam transcription factor bHLH48-like isoform X1 182 254 - -
Viun7g00374 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 235 IPR011598 GO:0046983
Viun7g00374 346 MobiDBLite consensus disorder prediction 96 110 - -
Viun7g00374 346 CDD bHLH_AtBPE_like 175 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00374 Viun-Chr7 2648816 2656661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00374 6 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.133 9.95e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g00374 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00374 - - gmx:100799133 520.39