Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00368 ATGGATTCCCATACCCATCATCATCATCATCAGGATTACCAGCTTCATCTCCATCACAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCCAGTTCGCTCTTTTCAAATCTCACACCTTTTGTCGGCTACGGTGCTGACACTGCTGCTTCGAGTACCTTCCACGAGTTGGAAGAAAGCACCAACCAAAAGTGTGGTTCTAAGGATTTCAGTTCGATGAATTCGCATAAGGGGTATGGTGTGGGGTTACCACCTCACTATCCCAGACACGGTTCTTCTTCTGCTACTTCCAGTTCTTCTATGGAAGGGTCTTATGGCTTGGTGGGTCCAATGGGAATGGATCATGAAGCTCCAAATAAGGGCTTCGGGTCAAGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGTCTTTTCTCCAACAACAATGTTTCATTCCAAAATGGGTTTGTCACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTCAGTCCATGTATTAGCAGGTTGAAGAATCAGATCAACTTCTCACCAAGAAATTCTTCTTCTCTGGGAATTTTGTCTCAGATCTCTGAAATAGGGAGTGAAGACATTGAGACAACTAGCCCTGATGATAATACTAGTCATGGAGGCAATGATACTCAACATTTTGGCCCTGGATTCCCCTATGGTTCTTGGAATGAGACTCCACAACTGTCAGAAAATCTCAGTGGCTTGAAAAGAGGGAGAAGTGAGAATGAAAAGATCTTTTCTGATGTTCAGAATGGAGAACCAGGAAACCAAGTTAATATATTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTTCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGTTGTGCTACTCATCCTCGTAGCATTGCCGAGAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTAGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTGCTGATAAACGGGCAAATTGCAAGTGTTCAAGCATGCAAAAGGCAGATTCATGA 1146 0.4319 MDSHTHHHHHQDYQLHLHHNQPSSGLLRFRSAPSSLFSNLTPFVGYGADTAASSTFHELEESTNQKCGSKDFSSMNSHKGYGVGLPPHYPRHGSSSATSSSSMEGSYGLVGPMGMDHEAPNKGFGSSLLRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNGELSPCISRLKNQINFSPRNSSSLGILSQISEIGSEDIETTSPDDNTSHGGNDTQHFGPGFPYGSWNETPQLSENLSGLKRGRSENEKIFSDVQNGEPGNQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLADKRANCKCSSMQKADS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00368 381 Gene3D - 308 379 IPR036638 GO:0046983
Viun7g00368 381 MobiDBLite consensus disorder prediction 83 104 - -
Viun7g00368 381 MobiDBLite consensus disorder prediction 203 220 - -
Viun7g00368 381 CDD bHLH_AtbHLH_like 312 364 IPR045239 -
Viun7g00368 381 FunFam Transcription factor bHLH130 family 308 377 - -
Viun7g00368 381 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
Viun7g00368 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 371 IPR036638 GO:0046983
Viun7g00368 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 357 IPR011598 GO:0046983
Viun7g00368 381 SMART finulus 313 363 IPR011598 GO:0046983
Viun7g00368 381 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 377 - -
Viun7g00368 381 MobiDBLite consensus disorder prediction 203 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00368 Viun-Chr7 2599049 2602247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00368 16 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.381 4.50e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g00368 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00368 - - gmx:100819605 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00368 7 2599049 2602247 Viun7g00368 7 2599049 2602247 ECH
Viun7g00368 7 2599049 2602247 Viun7g04221 7 40625989 40630596 ECH
Viun1g01802 1 29787150 29790140 Viun7g00368 7 2599049 2602247 PCT