Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00353 ATGAGTTTTTCTGGTTCAGTGAGCAAAGTAGCACTACCCTCTTCCTCCTCATCACCCAACTCTTCCATTGAGTCACTTGATGGCTTGAAATTTGGCCAGAAAATCTACTTTGAGGATGTCAGTGTTGCAGCTGCACCAACCACTCAAGGGGCCAAAACCAGTGCTGGGGTTTCTTCTTCTTCTTCAAAGAAGGGAAGAGGTGGTTCAGTGCAACCGGTTCAGCCTCCTAGGTGTCAGGTTCAGGGTTGCAATGCAGATCTGAGTGGAGCCAAAGCTTACTATTCTAGGCACAAGGTTTGTGCCATGCATTCCAAGTCCCCAACGGTCATTGTGGCTGGTCTGGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTCTCTGAATTTGATCAAGGAAAGCGAAGCTGCCGCCGGCGACTTGCCGGCCATAATGAGCGCCGGAGAAAGCCTCCACCCAGCTCCATATTAACCTCTCGCTATGGCAGGCTTTCTTCCCCTATTTTTGATAACAATGGTAGAGCTGGTGGCTTTCTCATGGAATTTGCTTCATATCCAAAGCTTACATTGAGAAACACCTTGCCAACTCCAAGATCAACCGAGCCACTACCTGGAAATCATGCTGCAACCTGGCAGAGGTCAGACACACCATCTGAATTCTTCCTGCATGGATCAGGAAGTGGTGGAACAAGCTTCCTTGGTTCCAAACATCCTTTTGTGGAAAGCTACACCGGAGTCACCGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGAACCACACAACCAAGTGTTGAACTGAACAACAATAACAACAATAACAATAACTTGTTGAATTTCAATGGGACATCCATAGCACAATTCACTGCTGCTTCCTCACAGGTTGCAGGCTTCCATCAACTTCCACATGCCACCTCATGGTACCTGAAGGCCCTTGACTCGCCGGAGGGTGTTCCTGATCTCGGCCTAGGCCAAATTTCGCCGTCTCTTCATGGCCATCTTCATGGTGAGCTTGATCTGCCACATCAGGGTAGGAGGCATTACATGGATCTTGGGGATTCCAGGGCCTGTGAGTCTTCTCAGTGGTCACTTTAA 1113 0.4861 MSFSGSVSKVALPSSSSSPNSSIESLDGLKFGQKIYFEDVSVAAAPTTQGAKTSAGVSSSSSKKGRGGSVQPVQPPRCQVQGCNADLSGAKAYYSRHKVCAMHSKSPTVIVAGLEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSILTSRYGRLSSPIFDNNGRAGGFLMEFASYPKLTLRNTLPTPRSTEPLPGNHAATWQRSDTPSEFFLHGSGSGGTSFLGSKHPFVESYTGVTDSNCALSLLSNQTWGSRTTQPSVELNNNNNNNNNLLNFNGTSIAQFTAASSQVAGFHQLPHATSWYLKALDSPEGVPDLGLGQISPSLHGHLHGELDLPHQGRRHYMDLGDSRACESSQWSL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00353 370 Gene3D - 68 139 IPR036893 GO:0003677|GO:0005634
Viun7g00353 370 Pfam SBP domain 78 151 IPR004333 GO:0003677
Viun7g00353 370 MobiDBLite consensus disorder prediction 142 161 - -
Viun7g00353 370 FunFam Squamosa promoter-binding-like protein 14 69 139 - -
Viun7g00353 370 SUPERFAMILY SBT domain 76 157 IPR036893 GO:0003677|GO:0005634
Viun7g00353 370 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 318 IPR044817 GO:0003677
Viun7g00353 370 ProSiteProfiles Zinc finger SBP-type profile. 75 152 IPR004333 GO:0003677
Viun7g00353 370 MobiDBLite consensus disorder prediction 47 75 - -
Viun7g00353 370 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00353 Viun-Chr7 2474499 2478026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00353 29 370 SBP-box Gene Family AT2G42200 42.935 5.66e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun7g00353 SBP 5.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00353 - - gmx:100789301 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00353 7 2474499 2478026 Viun7g00353 7 2474499 2478026 ECH