Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00326 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGCCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAAATGGCGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGGTTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTAGATGAAAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACAGAGAGGTACTCAACAATGCTGGCAGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACACAAAGATGGGCATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTCGTGGAGTATCAATCAGATGCCGCCGACAACGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCATAATGAAATGGATGTTCCGATTGAGGAGTTACTCAAACGTTATGAAGGGGAGAAAGGAGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTAAGAACAGCTGGTGATGGTAAGAAAATATTGGCATCAGAAAATGGTGATGATCATTTATCTGTTAGCAAAATTGGTACAAACAACTCCAGTATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAAAAATCTGTCTCAATTTGAGGAAGGTCAATCTGAAGATCTAAAAGAGGTTCCTAGAGAGACAGCCAATGAAGATTTTGCGTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTCGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTCGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGGATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCCGGGCAAAAGGATTCTGGCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAAGCAGAAGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACGAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGAATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAGCTTAAAAGGCAAGGATGGTTAAAACCAAACTCGTTTCATGTATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGGCGGATTCTCTTGACTGGTACACCACTACAGAACGATCTGATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTGAAGCGAGATGTGGAAAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTAGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCGTTTGATATATGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGTCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTGATCTTGACTATAGTATGGCTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACTCCTGCAACCTCAATCATGGAACGTACTGACATAGATGAGCTAGAAGTAATTAGGCCACTAAAATGTCAAAAAAAATTGCAAGGAACAAACATTTTTGAAGACATCCATAAGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGGACCTTGTTACCTTAAGGCATCCTGTATATGACATTCATATGGTGAAAGCAAACCCTACTTCGTATATGTACTCAACAAAGCTAGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGTGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAGTGCTCTGAAGTTTTGTTGCCGCTACTGTCACCAATTCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGTCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGCTATACATACATGCGCTTGGATGGATCGACCCAACCGGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATTAGTGACAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTCATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAGTATGCTGAAGGAGAAAAACCAGAACACTGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCATTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGAAAACCAGGAGTTTACTGAAGAAGCCATTGGGAGACTTGAGGAGGATGAATATGTAAATGAAGATGATGAAACTCCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGGCTTGGTATTAAATGGAAGTGAGAATAAGGAAGATAGACCACCAAACTCTGTTGCTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTGAACCAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATTTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGGATCGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACCATGGCATATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAACCCAAACCTAAAAAGAAGCCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGATTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGATGAGGATATCACTGGTATGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCAACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCGTCTGATTTAGAATCCAATGCTTTAGTTGTGCAATATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGCTGATTTTGAACCGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCATTCCTATGCCTGTTAAACGGATCTGGACAATAAAACCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTTGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTATTGTCAATGGACAATGCAAATAATGAGAAGACCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTTGACCGCAGGCAAAATCCATCACCCACCTGTAATGGTCTCTATTTTGATCAGAGTCTTTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGAGTGCCATTTGCAAATTTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCTGCAACTGGGCAAGTGAATGATAAAGTCATCCTCCCTAACCAAGGGGAAGGCATGCCAATGAGTGCTGATAGGTTGGATATTACTCTGGAATTCCCAAAAGAAGAGAGTGATGTCTTAGCTTTGTTTCCATCTGTTATAAACTTATCAATACATGGGACTGAACCAACACCATCTTTAAGTAAGCAAACAGGAGGAGATGACTTCAAAATTGGTCTGCTTATTGCCGAGAATCGTTTCAGGGAGGCAACAAGAATTTGTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCCAAGAGAGCATCAATTGATGCCAGTGAAATGCATCACCATCAGGCTGACTCAATATTCCAGTCAGTGCCATTACTTAAGGATCTTAGATTTGATCTCGCTCCATTCACTACAGATGAAATTGGACTTACTGCTGTGGATACACTTTTCCCCTTTGACCTGAATGTTGAAAGTTCATGGGAAATGGAGGGTGTTGGCATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATAA 6147 0.41 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQHKDGHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALHNEMDVPIEELLKRYEGEKGESVMKESSPEHSEDVEKIVRTAGDGKKILASENGDDHLSVSKIGTNNSSMVSGRRCDESNGDVATPTKNLSQFEEGQSEDLKEVPRETANEDFAYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGYETDYASALSEDHSDSPVHEDAGQKDSGIPMDEDIKSGEHLATTQSQAEEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDIQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMAAWESDEVQAIETPATSIMERTDIDELEVIRPLKCQKKLQGTNIFEDIHKKIWEERLKQAKERAAAIAWWNSLRCKKRPMYSTTLRDLVTLRHPVYDIHMVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETNVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISDSTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKSMLKEKNQNTGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVENQEFTEEAIGRLEEDEYVNEDDETPELGESVSNLNKENGLVLNGSENKEDRPPNSVAVKEDDADVLADVNQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGMEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYASDLESNALVVQYEHAESKTCESLADFEPKTAGRGKMGGKISIIPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLSMDNANNEKTITPGSGKALLKVTEDNIRMLLDVASEQANRELLLQKHFFALLSSAWKVASHVDRRQNPSPTCNGLYFDQSLFTSIGQPSQNSLKKSSERVPFANLVQSKKLVAAALDDSATGQVNDKVILPNQGEGMPMSADRLDITLEFPKEESDVLALFPSVINLSIHGTEPTPSLSKQTGGDDFKIGLLIAENRFREATRICEEDVSGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDASEMHHHQADSIFQSVPLLKDLRFDLAPFTTDEIGLTAVDTLFPFDLNVESSWEMEGVGMIPHDYVTGLISDLDDCTTFPEYTDIR 2048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00326 2048 Gene3D - 1630 1704 - -
Viun7g00326 2048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 698 IPR014001 -
Viun7g00326 2048 SMART helicmild6 1091 1174 IPR001650 -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 1919 1950 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 1471 1572 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 156 188 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 373 417 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 1 34 - -
Viun7g00326 2048 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Viun7g00326 2048 SMART ultradead3 517 710 IPR014001 -
Viun7g00326 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1231 IPR027417 -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 282 481 - -
Viun7g00326 2048 CDD DEXQc_SRCAP 521 743 - -
Viun7g00326 2048 Gene3D - 490 766 IPR038718 -
Viun7g00326 2048 SUPERFAMILY Homeodomain-like 1645 1705 IPR009057 -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 347 372 - -
Viun7g00326 2048 Coils Coil 1402 1422 - -
Viun7g00326 2048 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 189 214 - -
Viun7g00326 2048 PANTHER HELICASE SRCAP-RELATED 15 1944 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 152 214 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 291 308 - -
Viun7g00326 2048 CDD SF2_C_SNF 1050 1185 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 1471 1486 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 432 458 - -
Viun7g00326 2048 Gene3D - 1032 1280 IPR027417 -
Viun7g00326 2048 Coils Coil 1452 1472 - -
Viun7g00326 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 743 IPR027417 -
Viun7g00326 2048 Pfam SNF2-related domain 538 810 IPR000330 GO:0005524|GO:0140658
Viun7g00326 2048 Pfam HSA domain 27 93 IPR014012 -
Viun7g00326 2048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Viun7g00326 2048 SMART bromneu2 23 94 IPR014012 -
Viun7g00326 2048 FunFam Photoperiod-independent early flowering 1 491 766 - -
Viun7g00326 2048 Pfam Myb-like DNA-binding domain 1647 1714 - -
Viun7g00326 2048 Coils Coil 1278 1298 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 328 346 - -
Viun7g00326 2048 Pfam Helicase conserved C-terminal domain 1062 1174 IPR001650 -
Viun7g00326 2048 Gene3D - 767 823 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 1544 1571 - -
Viun7g00326 2048 MobiDBLite consensus disorder prediction 1919 1963 - -
Viun7g00326 2048 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 767 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00326 Viun-Chr7 2331600 2349153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00326 541 813 RAD5 or RAD16-like Gene Family AT5G43530 29.814 4.59e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g00326 SNF2_N 8.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00326 K11661 - gmx:100794898 3483.35