Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00325 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGCCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAAATGGCGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGGTTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTAGATGAAAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACAGAGAGGTACTCAACAATGCTGGCAGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACACAAAGATGGGCATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTCGTGGAGTATCAATCAGATGCCGCCGACAACGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCATAATGAAATGGATGTTCCGATTGAGGAGTTACTCAAACGTTATGAAGGGGAGAAAGGAGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTAAGAACAGCTGGTGATGAAAATGGTGATGATCATTTATCTGTTAGCAAAATTGGTACAAACAACTCCAGTATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAAAAATCTGTCTCAATTTGAGGAAGGTCAATCTGAAGATCTAAAAGAGGTTCCTAGAGAGACAGCCAATGAAGATTTTGCGTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTCGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTCGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGGATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCCGGGCAAAAGGATTCTGGCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAAGCAGAAGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACGAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGAATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAGCTTAAAAGGCAAGGATGGTTAAAACCAAACTCGTTTCATGTATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGGCGGATTCTCTTGACTGGTACACCACTACAGAACGATCTGATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTGAAGCGAGATGTGGAAAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTAGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCGTTTGATATATGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGTCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTGATCTTGACTATAGTATGGCTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACTCCTGCAACCTCAATCATGGAACGTACTGACATAGATGAGCTAGAAGTAATTAGGCCACTAAAATGTCAAAAAAAATTGCAAGGAACAAACATTTTTGAAGACATCCATAAGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGGACCTTGTTACCTTAAGGCATCCTGTATATGACATTCATATGGTGAAAGCAAACCCTACTTCGTATATGTACTCAACAAAGCTAGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGTGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAGTGCTCTGAAGTTTTGTTGCCGCTACTGTCACCAATTCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGTCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGCTATACATACATGCGCTTGGATGGATCGACCCAACCGGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATTAGTGACAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTCATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAGTATGCTGAAGGAGAAAAACCAGAACACTGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCATTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGAAAACCAGGAGTTTACTGAAGAAGCCATTGGGAGACTTGAGGAGGATGAATATGTAAATGAAGATGATGAAACTCCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGGCTTGGTATTAAATGGAAGTGAGAATAAGGAAGATAGACCACCAAACTCTGTTGCTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTGAACCAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATTTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGGATCGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACCATGGCATATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAACCCAAACCTAAAAAGAAGCCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGATTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGATGAGGATATCACTGGTATGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCAACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCGTCTGATTTAGAATCCAATGCTTTAGTTGTGCAATATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGCTGATTTTGAACCGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCATTCCTATGCCTGTTAAACGGATCTGGACAATAAAACCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTTGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTATTGTCAATGGACAATGCAAATAATGAGAAGACCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTTGACCGCAGGCAAAATCCATCACCCACCTGTAATGGTCTCTATTTTGATCAGAGTCTTTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGAGTGCCATTTGCAAATTTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCTGCAACTGGGCAAGTGAATGATAAAGTCATCCTCCCTAACCAAGGGGAAGGCATGCCAATGAGTGCTGATAGGTTGGATATTACTCTGGAATTCCCAAAAGAAGAGAGTGATGTCTTAGCTTTGTTTCCATCTGTTATAAACTTATCAATACATGGGACTGAACCAACACCATCTTTAAGTAAGCAAACAGGAGGAGATGACTTCAAAATTGGTCTGCTTATTGCCGAGAATCGTTTCAGGGAGGCAACAAGAATTTGTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCCAAGAGAGCATCAATTGATGCCAGTGAAATGCATCACCATCAGGCTGACTCAATATTCCAGTCAGTGCCATTACTTAAGGATCTTAGATTTGATCTCGCTCCATTCACTACAGATGAAATTGGACTTACTGCTGTGGATACACTTTTCCCCTTTGACCTGAATGTTGAAAGTTCATGGGAAATGGAGGGTGTTGGCATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATAA 6126 0.4102 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQHKDGHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALHNEMDVPIEELLKRYEGEKGESVMKESSPEHSEDVEKIVRTAGDENGDDHLSVSKIGTNNSSMVSGRRCDESNGDVATPTKNLSQFEEGQSEDLKEVPRETANEDFAYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGYETDYASALSEDHSDSPVHEDAGQKDSGIPMDEDIKSGEHLATTQSQAEEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDIQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMAAWESDEVQAIETPATSIMERTDIDELEVIRPLKCQKKLQGTNIFEDIHKKIWEERLKQAKERAAAIAWWNSLRCKKRPMYSTTLRDLVTLRHPVYDIHMVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETNVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISDSTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKSMLKEKNQNTGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVENQEFTEEAIGRLEEDEYVNEDDETPELGESVSNLNKENGLVLNGSENKEDRPPNSVAVKEDDADVLADVNQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGMEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYASDLESNALVVQYEHAESKTCESLADFEPKTAGRGKMGGKISIIPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLSMDNANNEKTITPGSGKALLKVTEDNIRMLLDVASEQANRELLLQKHFFALLSSAWKVASHVDRRQNPSPTCNGLYFDQSLFTSIGQPSQNSLKKSSERVPFANLVQSKKLVAAALDDSATGQVNDKVILPNQGEGMPMSADRLDITLEFPKEESDVLALFPSVINLSIHGTEPTPSLSKQTGGDDFKIGLLIAENRFREATRICEEDVSGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDASEMHHHQADSIFQSVPLLKDLRFDLAPFTTDEIGLTAVDTLFPFDLNVESSWEMEGVGMIPHDYVTGLISDLDDCTTFPEYTDIR 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00325 2041 Coils Coil 1445 1465 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 1912 1956 - -
Viun7g00325 2041 Gene3D - 1623 1697 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 156 188 - -
Viun7g00325 2041 PANTHER HELICASE SRCAP-RELATED 15 1937 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 285 301 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 1 34 - -
Viun7g00325 2041 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Viun7g00325 2041 Gene3D - 760 816 - -
Viun7g00325 2041 SMART helicmild6 1084 1167 IPR001650 -
Viun7g00325 2041 CDD SF2_C_SNF 1043 1178 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 1464 1479 - -
Viun7g00325 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 736 IPR027417 -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 366 410 - -
Viun7g00325 2041 FunFam Photoperiod-independent early flowering 1 484 759 - -
Viun7g00325 2041 CDD DEXQc_SRCAP 514 736 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 189 214 - -
Viun7g00325 2041 Coils Coil 1271 1291 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 321 339 - -
Viun7g00325 2041 Pfam SNF2-related domain 531 803 IPR000330 GO:0005524|GO:0140658
Viun7g00325 2041 MobiDBLite consensus disorder prediction 1537 1564 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 152 214 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 275 474 - -
Viun7g00325 2041 Pfam Myb-like DNA-binding domain 1640 1707 - -
Viun7g00325 2041 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 760 825 - -
Viun7g00325 2041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 1224 IPR027417 -
Viun7g00325 2041 SMART ultradead3 510 703 IPR014001 -
Viun7g00325 2041 SUPERFAMILY Homeodomain-like 1638 1698 IPR009057 -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 1912 1943 - -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 1464 1565 - -
Viun7g00325 2041 Pfam HSA domain 27 93 IPR014012 -
Viun7g00325 2041 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1058 1208 IPR001650 -
Viun7g00325 2041 SMART bromneu2 23 94 IPR014012 -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 425 451 - -
Viun7g00325 2041 Pfam Helicase conserved C-terminal domain 1055 1167 IPR001650 -
Viun7g00325 2041 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1025 1274 - -
Viun7g00325 2041 Gene3D - 483 759 IPR038718 -
Viun7g00325 2041 Coils Coil 1395 1415 - -
Viun7g00325 2041 Gene3D - 1025 1273 IPR027417 -
Viun7g00325 2041 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 691 IPR014001 -
Viun7g00325 2041 MobiDBLite consensus disorder prediction 340 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00325 Viun-Chr7 2331600 2349153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00325 534 806 RAD5 or RAD16-like Gene Family AT5G43530 29.814 4.42e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun7g00325 SNF2_N 8.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00325 K11661 - gmx:100794898 3490.28