Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00308 ATGAAAGCCTCATTCAATTCTTCTTTTGTTTTCAATATTGATCCTTTAACCACTCCTGGTGGCGAGGGATTTGCTTTCATATTGACAGATGATACCTCTCTTCAACTTAACAGTGGAGGCCAATGGCTTGGTATTGTCAACCCAACAAGCATAGGGGTTTCTGACATAGTTGCAGTGGAGTTCGATACTAGGAAAAGCTACACTGAAGATGTTGATGACAACCATGTTGGGGTGGATGTTAAGAGCATCTATTCCATCAATCAAGAACCTCTTGGACCACACGGTGTTAATCTCTCTAGTGGAATTGATGTTTTTGCTACTGTTTACTTTGATGCTGAAGGTGGGAATATGATGATTTCTGTTTCTCCATCAGATTTTATGTTGAGGACACCACCAGTGCTTGAGGTGCATCTTGATCTCTCTAAACTTCTTCCAGAAGATGTTTTTGTGGGATTTTCAGCTTCCACAGGGGTATATACTCAGATCAACACAATACGATCATGGTATTTCTCTAGCATGGAGCATATTGACATCGATCCCATAAGTCAAGTACGGTTATGGATATGGATTCCAATAATTGTGGTTGGAGGAGTATGTGGGCTTGCTGGTGCATTGTATTGGAGAAAAAAACGCAGAAAGAGACAACGGACTGAAGAAGATCTGAACATAGAGCTTGAAATTAAAAGCTCATCTAATGCTCCACATAAGTTTCATCTGAAGGAGATTCTGTCTGCCACAAAGAACTTCCACCCTTCAAACAAGCTCGGGAAAGGAGGGTTCGGGATGGTTTATAGAGGCACTTTAAACGGAAAAGATGTTGCTGTGAAGAGGATTTCAAAGAACACACGTCATGGTAAGCAAGACTTTATAGCAGAGATCAGAACCATAGGGAATCTGAATCATAAAAATCTGGTGAAGCTAATAGGATGGTGCTATGAGAAGGGTGAGATCCTCCTTGTGTATGATCTAATGCAAAATGGTAGCTTAGACAGATTCATATTTTCAACAACAGGAGGGGATTCAAGTCTGAGTTGGGAAAGGAGGCTTAGTGTGATATGTGGGGTTTCAAGGGCTCTGGAATATCTTCACAATGGATGTGATAAAAGAGTGCTCCACAGAGACATAAAACCAAGCAATGTGATGTTGGATTCGGACTTCAATGCTCGGCTTGGAGATTTTGGCTTGGCTCGCACCATCAATCTCAGTGAAGAAACTCACCACTCAACAAAAGAAATTGCTGGAACATTAGGGTACATGGCACCAGAAAGCTTCCACACGCGGAGGGCATCTGTTGAAACTGATGTGTATGCATTTGGGGTTCTGGTTCTGGAAGTTGTGTGTGGAGGAAGAAATGTTGAACACAAACAGAATGTGAGCATTTTGGAGTGGGTTTGGGAGCTTCATGGCAGAGAAAACATAACTGAGGCTGTGGATTTGAGTCTGAAGGGTGATTTTGATAAGGTTGAAGCCAAGTGTGTGCTTGAGTTGGGGCTAGCATGCTGCCATCCTAACCCGTGTGAGAGGCCATCAATGAGAACTGTGTTGCAGGTTCTAACGGGGGAAGCACCTCCACCTTCTGTACCATTTCAGAAACCTGCTTTCACATGGCCTGCCACTGCTCCTCTTCTCAACAACCACTTCAATTCTCAGGTTACAGTCTCCCAAAATGAACCAATAACTGAAATAACTAGTGGAAGATGA 1701 0.428 MKASFNSSFVFNIDPLTTPGGEGFAFILTDDTSLQLNSGGQWLGIVNPTSIGVSDIVAVEFDTRKSYTEDVDDNHVGVDVKSIYSINQEPLGPHGVNLSSGIDVFATVYFDAEGGNMMISVSPSDFMLRTPPVLEVHLDLSKLLPEDVFVGFSASTGVYTQINTIRSWYFSSMEHIDIDPISQVRLWIWIPIIVVGGVCGLAGALYWRKKRRKRQRTEEDLNIELEIKSSSNAPHKFHLKEILSATKNFHPSNKLGKGGFGMVYRGTLNGKDVAVKRISKNTRHGKQDFIAEIRTIGNLNHKNLVKLIGWCYEKGEILLVYDLMQNGSLDRFIFSTTGGDSSLSWERRLSVICGVSRALEYLHNGCDKRVLHRDIKPSNVMLDSDFNARLGDFGLARTINLSEETHHSTKEIAGTLGYMAPESFHTRRASVETDVYAFGVLVLEVVCGGRNVEHKQNVSILEWVWELHGRENITEAVDLSLKGDFDKVEAKCVLELGLACCHPNPCERPSMRTVLQVLTGEAPPPSVPFQKPAFTWPATAPLLNNHFNSQVTVSQNEPITEITSGR 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00308 566 Gene3D - 1 180 - -
Viun7g00308 566 Gene3D Transferase(Phosphotransferase) domain 1 324 523 - -
Viun7g00308 566 SMART serkin_6 249 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00308 566 ProSitePatterns Protein kinases ATP-binding region signature. 255 276 IPR017441 GO:0005524
Viun7g00308 566 FunFam L-type lectin-domain containing receptor kinase IX.1 324 528 - -
Viun7g00308 566 Gene3D Phosphorylase Kinase; domain 1 227 323 - -
Viun7g00308 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 370 382 IPR008271 GO:0004672|GO:0006468
Viun7g00308 566 CDD STKc_IRAK 255 520 - -
Viun7g00308 566 Pfam Legume lectin domain 3 175 IPR001220 GO:0030246
Viun7g00308 566 CDD lectin_legume_LecRK_Arcelin_ConA 3 172 IPR001220 GO:0030246
Viun7g00308 566 FunFam serine/threonine-protein kinase PBS1-like 213 323 - -
Viun7g00308 566 Pfam Protein kinase domain 250 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00308 566 ProSiteProfiles Protein kinase domain profile. 249 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g00308 566 ProSitePatterns Legume lectins beta-chain signature. 57 63 IPR019825 -
Viun7g00308 566 SUPERFAMILY Protein kinase-like (PK-like) 230 518 IPR011009 -
Viun7g00308 566 PANTHER - 4 525 - -
Viun7g00308 566 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 172 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00308 Viun-Chr7 2224081 2226515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00308 3 536 Receptor kinase-like Gene Family AT5G55830 38.898 2.05e-120 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun7g00308 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00308 - - tcc:108661882 664.84