Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00302 ATGGAACTGGCTTTGAGCTTAGGCGACACTTCCAAGCCCTTCACTTTTCTCGACAAGCCTGCAAATTTACCCTCCAAGGACCCTCCTGGGTTCTGCATAGCAACGGGGAAAGGCTTTGACGAGAAAAGAAGTGATGCTGAGAAAAGGGGTTCTTCAGATCCACCGGTTCAGCTTGATCTTCTTCCTTTCACTCCCGTTCTCAGATCCCAACCTCCTTCCCAGCTTCGAATCCCTTGGCTCGCTGAACCATGTGGAGCGGCGAGGGTGCTGGACGTAAACCTTTTTCCGGCGGCGACGGAGGACGGCGATGACGGGACGTCGCTGTCGTCGCCGAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATGAGAAACGGTAATGCGGAGTTTGGAGGAAGAAACAGGAGGGAACAACAAGAGGGTGAAGGCACCAGAGCCAGTGATGACGAAGAAAATGGCTCAACCAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACGACTCTCAATCCGAAGCAGAAGCTTGCTTTGGCTAAACAGTTGAATCTCCTCCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTGACAGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTCAGAGCCTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCGGCCACAACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACAACGAACCAAACTTCTTCCACCATCAACAATAACGCTTCTCAACTCCCTGTCGAGTTATCTCTCAGCAAGCCCAGAATATTGCCCTTCCCCAATGCCCAGGCCCAAGCAACCCAGACACAAGCCCAAGCTCAAGCCCATCAGATACCCTCTTCATGA 984 0.501 MELALSLGDTSKPFTFLDKPANLPSKDPPGFCIATGKGFDEKRSDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLAEPCGAARVLDVNLFPAATEDGDDGTSLSSPSSAVSPFQMDFSMRNGNAEFGGRNRREQQEGEGTRASDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNASQLPVELSLSKPRILPFPNAQAQATQTQAQAQAHQIPSS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00302 327 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Viun7g00302 327 SMART HOX_1 155 217 IPR001356 GO:0003677
Viun7g00302 327 MobiDBLite consensus disorder prediction 103 123 - -
Viun7g00302 327 MobiDBLite consensus disorder prediction 100 160 - -
Viun7g00302 327 MobiDBLite consensus disorder prediction 131 160 - -
Viun7g00302 327 SUPERFAMILY Homeodomain-like 154 222 IPR009057 -
Viun7g00302 327 Coils Coil 219 249 - -
Viun7g00302 327 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355|GO:0043565
Viun7g00302 327 Gene3D - 161 211 - -
Viun7g00302 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 288 - -
Viun7g00302 327 CDD bZIP 206 245 - -
Viun7g00302 327 CDD homeodomain 157 214 IPR001356 GO:0003677
Viun7g00302 327 SMART halz 213 256 IPR003106 GO:0006355|GO:0043565
Viun7g00302 327 MobiDBLite consensus disorder prediction 38 52 - -
Viun7g00302 327 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677
Viun7g00302 327 Pfam Homeodomain 157 211 IPR001356 GO:0003677
Viun7g00302 327 FunFam Homeobox-leucine zipper protein 18 141 218 - -
Viun7g00302 327 MobiDBLite consensus disorder prediction 27 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00302 Viun-Chr7 2134428 2136514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00302 55 279 Homeobox Transcription Factor Family AT5G47370 55.085 3.57e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun7g00302 Homeodomain 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00302 K09338 - gmx:100776113 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00302 7 2134428 2136514 Viun7g00302 7 2134428 2136514 ECH
Viun1g01868 1 30287785 30289263 Viun7g00302 7 2134428 2136514 PCT