Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00279 ATGAGAACTTCGTGGGCAGATTCTGCTGACAACTCAGCCATTGGTTCTGGCAATGGCAATTTCTCGGCTCATCCTCCCCGAGGTGCATACGTGCCTCCGCATCTTCGCAACAGGTCAATGTCGTCAGAGGCTCCTGCAGTGTCACACTCGCCGGCTCCTTTGCCGGTGAATGACCGGGGGAATCCTGGTGGTGCAGCTCCTCATCAGGGTGGTGGTGGTTACTTTAAAGCTGATCAAGGGCGGCAACAAGGATATGGTTCTGGTTATCAGACTGGTGGTGGCTGGAATGGTAGAGGGGCGGGGAGGGACCGTGGGAGGCGTGAGGTGAACCCTTTTGAGAATGATGAAGCTGATGATAAATCTGTGGAGCAAGAGGGCACTGGGATTAACTTTGAGGCTTATGATGATATCCCTGTGGAGACTAGTGGGGACAATGTGCCCCCGCCTGTGAATACATTTGCCGAAATAGATTTGGGCGAGGCATTGAATCATAATATACAGAGATGCAAGTATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCCCTTTCGGGGCGAGACTTGATGGCCTGTGCTCAGACCGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTGTTATTAGTGGAATCATGAGGGAGCAATATGTTCAAAGGCCACGTGTGGCTAGAACTGCTTTTCCGCTGGCACTTATCCTCTCCCCCACACGGGAACTTTCATGTCAGATACACGATGAGGCCAAAAAGTTTTCGTACCAAACAGGTGTGAAAGTGGTGGTTGCTTATGGAGGAGCTCCAATCACCCAACAGTTACGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGAAGATTGGTGGATTTGCTTGAGAGGGCTCGGGTGTCACTGCAGATGATAAGGTATTTGGCGCTTGATGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCGGGCATGAGACAGACACTGTTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGAGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGGAGCCATCTCATGGATCTTCTTCACGCTCAGAGGGAAAATGGAATTTGCGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCCAGCATTCATGGTGACAGAACACAACAAGAGAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACTGATGTTGCAGCACGTGGTCTGGACATCCCTCGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTACGTGCACCGAATAGGAAGAACGGGACGAGCTGGTAAAATGGGATTAGCAACGGCCTTTTTCAATGAAAGTAATTTATCCTTGGCCAAACCATTGGCTGATCTGATGCAAGAGGCTAATCAAGAAGTTCCTGCCTGGCTCACCCGTTATGCGGCAAGGGCTGCTTACAGTGGTGGCAACAGAAACAGGAGGTCAGGGGGATCCCGTTTTGGTGGTCGTGATTTTAGGAGGGAGGGCTCATTTAATAAATCAACAGATTACTATAGTGGTGGAAATGGTGGCGGAGCAGCTGGGGGATATGGCAATTACGGTGGAGGAGGAGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1836 0.4875 MRTSWADSADNSAIGSGNGNFSAHPPRGAYVPPHLRNRSMSSEAPAVSHSPAPLPVNDRGNPGGAAPHQGGGGYFKADQGRQQGYGSGYQTGGGWNGRGAGRDRGRREVNPFENDEADDKSVEQEGTGINFEAYDDIPVETSGDNVPPPVNTFAEIDLGEALNHNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPVISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGICGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAARAAYSGGNRNRRSGGSRFGGRDFRREGSFNKSTDYYSGGNGGGAAGGYGNYGGGGGYGQGVTSAWD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00279 611 FunFam Probable ATP-dependent RNA helicase DDX4 114 368 - -
Viun7g00279 611 SMART ultradead3 170 381 IPR014001 -
Viun7g00279 611 CDD SF2_C_DEAD 378 514 - -
Viun7g00279 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 544 IPR001650 -
Viun7g00279 611 MobiDBLite consensus disorder prediction 100 123 - -
Viun7g00279 611 Pfam DEAD/DEAH box helicase 175 355 IPR011545 GO:0003676|GO:0005524
Viun7g00279 611 MobiDBLite consensus disorder prediction 1 123 - -
Viun7g00279 611 Gene3D - 369 549 IPR027417 -
Viun7g00279 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Viun7g00279 611 MobiDBLite consensus disorder prediction 551 570 - -
Viun7g00279 611 SMART helicmild6 424 505 IPR001650 -
Viun7g00279 611 MobiDBLite consensus disorder prediction 1 19 - -
Viun7g00279 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
Viun7g00279 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 520 IPR027417 -
Viun7g00279 611 CDD DEADc_DDX3_DDX4 152 372 IPR044763 GO:0003724|GO:0005524
Viun7g00279 611 FunFam ATP-dependent RNA helicase RhlB 369 548 - -
Viun7g00279 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 544 - -
Viun7g00279 611 Gene3D - 106 368 IPR027417 -
Viun7g00279 611 Pfam Helicase conserved C-terminal domain 392 505 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00279 Viun-Chr7 1963412 1969278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g00279 135 537 Eukaryotic Initiation Factors Gene Family AT3G19760 31.188 3.03e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00279 K11594 - gmx:100818326 993.801